Plant FIBer expression Database

Potri.012G106200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61970 904 / 0 signal recognition particle-related / SRP-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G105600
[exp]
1080 / 0 AT5G61970 915 / 0.0 signal recognition particle-related / SRP-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032538
[exp]
508 / 6e-178 AT5G61970 487 / 5e-170 signal recognition particle-related / SRP-related (.1)
Lus10043202
[exp]
497 / 2e-171 AT5G61970 468 / 6e-160 signal recognition particle-related / SRP-related (.1)
Lus10040614
[exp]
358 / 5e-119 AT5G61970 345 / 3e-114 signal recognition particle-related / SRP-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF16969 SRP68 RNA-binding signal recognition particle 68
Representative CDS sequence
>Potri.012G106200.4 pacid=42783002 polypeptide=Potri.012G106200.4.p locus=Potri.012G106200 ID=Potri.012G106200.4.v4.1 annot-version=v4.1
ATGGTGAAAGAAAACGAGGTTGCCGCAATGGAAATCGAGGGTCCAAAACCGAACAATTCTGATCAGATCAATCCGAGATACTCAATCAATGTCTTGCAAT
TACTGAAATCTGCGCAAATGCAGCATGGATTGAGGCACGGGGATTATGCGCGTTATCGGAGGTATTGTACTGCGCGGTTAAGGAGGTTATACAAATCATT
GAAGTTTACTCATGGTCGCGGTAAATATACGCGTAGAGCTATGAATGAATCAACTGTTACTGAAGTGAGGTATCTGCATCTGGTTCTTTATACAGCGGAG
AGAGCATGGAGCCATGCCATGGAAAAACGACAGCTTCTAGATGGCCCAAATGCTAAGCAACGTATTTATTTGATTGGGAGACTGAGGAAGGCAGTGAAAT
GGGCTGATTTATTCTCAAGATTATGCGCTGCCAAGGGAGATTCCAGAACATCTTTAGAAGCGGAGGCCTACGCATCATGCATGAATGGGCTTTTGTTGTT
TGAACAAGATCGGAATTGGGACACTGCATTGAAGAATTTCATCAGTGCCAGAGCTGTATATGAGGAACTTGGGAAATATGGAGACTTAGAGAATCAAGTT
TTGTGCCGTGAGCGTGTTGAGGAGCTGGAACCTAGTGTTAGATACTGCCGACACAAAATCGGCGAGTCAAATCTGAAAACTTCTGAACTCTTGCAAATTG
GTGAGATGGAAGGTCCTGCCCTAGACCTTTTCAAAGCAAAATTGGAGGCTGCAATGGCTGAAGCGAGATCTCAACAGGCTGCATCACTGACAGAGTTTCG
CTGGCTTGGTCACAGATTTCCAATTTCGAATGCAAAAACTCGGGTTTCCATTTTAAAAGCACAAGAATTGGAGAAGGATTTGCATGGTCCTGCAGCAGAT
TCACTCCCAGTTGAGAAAAAATTAGCAGTCTTTGACAAAATTTATACTGCATATCAAGAGGCTAGGAGCTTCATTCGCAGTGACTTGGCCAGTGCTGGTA
ATGCCGACAGTGTCAAAGATGACTTAAATGGGCTTGATAAAGCTGTTGGTGCTGTACTAGGACAGCGGACCATTGAGCGTAACCAGTTGTTGGTTAGCAT
TGCCAAGAGTAAACTTGCTAGGCACCGAGATGACAAAAATGAGAAAGTTACCAAGCCAGAAGAGCTTGTTCGCTTGTATGATCTTTTATTACAGAATACA
GGTGATCTTTCTGATTTAGTTAGTTCTGGAAGAGACCGAAAACCTGAAGAAGTTGCATTTTCTGAAGACTGTGTTCTTCGTAGTATGGCTTTCCGAGCAC
AAAGGTGCTTCTACTTGGCAAAATCATACAGCTCAGCTGGAAAACGAACAGAAGCATTTGCATTATACTGCCATGCTCGATCCCTTGCTGAGAATGCCCT
AAAGAAATTCCAAACCATGATGGACACTGATGAGGCAATGACCAAAGAGTTGAAAACACTATACAACGAGTGCAGAGCTAACAGTTGCATAGAGCATGCA
ACTGGGATTATGGAGGATGAGAAGGCTCCGGAGAATCTCTCAAAGAAAATTTCTACAATATCACTCAGCGGAGTGGACAAGAAGGCGGAGAAATTCCTCG
TTGAGAAACTAGATGTCTACGAGTCTGCTGTTGGTGAACCAAACGTCAAAAGTGTTCCTCGCATTGGAGTCTTCCCTCCAGCTTTCCAATCAATACCTCG
AAATCCTATTGTTCTAGACCTTGCCTATAACTGCATTGATTTCCCATCTCTAGAAAACAGGATGAAGAAGGACAAGAAGGGCTTCATAAGTAGGCTCTGG
CGATGA
AA sequence
>Potri.012G106200.4 pacid=42783002 polypeptide=Potri.012G106200.4.p locus=Potri.012G106200 ID=Potri.012G106200.4.v4.1 annot-version=v4.1
MVKENEVAAMEIEGPKPNNSDQINPRYSINVLQLLKSAQMQHGLRHGDYARYRRYCTARLRRLYKSLKFTHGRGKYTRRAMNESTVTEVRYLHLVLYTAE
RAWSHAMEKRQLLDGPNAKQRIYLIGRLRKAVKWADLFSRLCAAKGDSRTSLEAEAYASCMNGLLLFEQDRNWDTALKNFISARAVYEELGKYGDLENQV
LCRERVEELEPSVRYCRHKIGESNLKTSELLQIGEMEGPALDLFKAKLEAAMAEARSQQAASLTEFRWLGHRFPISNAKTRVSILKAQELEKDLHGPAAD
SLPVEKKLAVFDKIYTAYQEARSFIRSDLASAGNADSVKDDLNGLDKAVGAVLGQRTIERNQLLVSIAKSKLARHRDDKNEKVTKPEELVRLYDLLLQNT
GDLSDLVSSGRDRKPEEVAFSEDCVLRSMAFRAQRCFYLAKSYSSAGKRTEAFALYCHARSLAENALKKFQTMMDTDEAMTKELKTLYNECRANSCIEHA
TGIMEDEKAPENLSKKISTISLSGVDKKAEKFLVEKLDVYESAVGEPNVKSVPRIGVFPPAFQSIPRNPIVLDLAYNCIDFPSLENRMKKDKKGFISRLW
R

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61970 signal recognition particle-re... Potri.012G106200
[exp]
0 1
AT4G32120 Galactosyltransferase family p... Potri.018G024500
[exp]
2.44 0.9111
AT2G40730 CTEXP cytoplasmic tRNA export protei... Potri.013G090500
[exp]
3.46 0.9283
AT2G19950 GC1 golgin candidate 1 (.1.2) Potri.018G086600
[exp]
5.19 0.9096
AT5G22030 UBP8 ubiquitin-specific protease 8 ... Potri.001G214800
[exp]
6.32 0.9033
AT1G53040 Protein of unknown function (D... Potri.001G399800
[exp]
6.63 0.8999
AT4G30160 ATVLN4, VLN4 villin 4 (.1.2) Potri.006G165300
[exp]
7.48 0.9041
AT1G20540 Transducin/WD40 repeat-like su... Potri.002G011200
[exp]
7.93 0.9028
AT2G16405 Transducin/WD40 repeat-like su... Potri.004G160000
[exp]
10.48 0.9049
AT2G27900 unknown protein Potri.001G212600
[exp]
19.07 0.8983
AT1G50500 ATVPS53, HIT1 HEAT-INTOLERANT 1, ARABIDOPSIS... Potri.016G023000
[exp]
19.18 0.8862

Potri.012G106200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.