Plant FIBer expression Database

Potri.012G106300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G53200 301 / 1e-93 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030239
[exp]
503 / 2e-171 AT1G53200 257 / 4e-77 unknown protein
Lus10011648
[exp]
404 / 9e-133 AT1G53200 216 / 7e-62 unknown protein
Lus10005971
[exp]
125 / 3e-32 AT1G53200 66 / 4e-12 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14929 TAF1_subA TAF RNA Polymerase I subunit A
Representative CDS sequence
>Potri.012G106300.3 pacid=42783668 polypeptide=Potri.012G106300.3.p locus=Potri.012G106300 ID=Potri.012G106300.3.v4.1 annot-version=v4.1
ATGTGTTTGCATGTTGAGACGGCGGAAAATCTCCCAATGGGGGACGAAGCCAGTGGTAGCAAAGCATTGGAGAGCCCACCCGTGAAGTTAGCACTTGAAG
TTGATGCTAAAAAATCGAAAAAACGCAAAAGGAGAACTCATTGTAGTACAATGGTTGCTAATGATTGTCATATCACGAAACTGGAAAAATCTTATACTAG
AGTTATGCTGTCTTTAACCAAGCCATCCTACCTTCTCGGACTTGGTTCCAACTTTATTCGACATGAAAATCGTATGAGATTGTTCCATCTTTTGCAAAAA
TTAGTCAGACAACACAATTGGACAGAAGCTGCTGGGGTGCTAAGTGTGTTTTTGAGAGCCACATGCAAAGATAAATCTCCTATCTTGAATCGCTTCAAGT
ATACCGTTTCGCTGGATCTTCTTAAGCATATAGAAGGTGATGATGTCAGTTTGTCAGCAATTTCTAGCATTTATGATACTTGGATGGCAAGGATTGGAAC
CAACTTATCAAATACAAGAAACAAGGATGAGCAAATGAAAGAGGATAGCTTTGTTGTTCGTTTGCAGTTCATCCTTTCCCGTGTTATGCAAGGAGATATT
GAAGCTGAACGTCACAATGTCAAAATCTTGATGGAAGAGCGTGGATACGAGAATCATCCATTTTTTAATATGATCCTGGGCTTGATATCTAGTCAGTTGT
GGTATTCTAGTCTCCCGGAAGAAATGCAGTGGAAGGATACTTTCCAAATTCATTCCCCTACGCATTCAGACATGCCAGCCACTCCTTCACAACTAGAGAT
GTCAGCTATGAGATTCAGCCATGAAGTTGGGGACTCAGAGCGGCACAATGCAATTTGTAATGAAGAAAGTGGCGCTTCCTTTCATTGTGATTCAGAGACT
TCTGTCATGAAAGATAAAGAAATATCTGTGGAGGTTGATGGTAGCTTTAACAGAGAAGCGTTACCTGTGGAGGTTGGTAAACTGCACAAAGAAAATCTCC
AAAAAGACTTTCAACCACAAGGCTTTTATGTGAACTCTGCTGAAAGTGATGCCTCCTTTGATAATAATGGTGGTCACATGCACCTTGTCCCTAATCCGAC
TGCCTTTGAGAACTCAGGTTCATGGCTGTTACCATTGCGAACTGGGAATTGGGACTTGGATCAGATAGTTCGTGATGAGGAATATAGGAATGCAGTGAAG
TATTTGCAAGAAGCTGTACACTCCACTCCTCCAGTACCAGCAGCCTTGCTTCCTTTGGTACAGTTATTGCTGATTGGATGCAAAGACAAAGAGGCCCTTG
ATGAAATTGAGAAGTTCTGTGCCAATTCAAGCGGAGCACTTCCTAAGAGAATGAAGGCTAATATTTTGGAGCACGTTGATCCTAATAACAGTGTCGTTCT
TGCAACTTGTTATGAGGACACCTTAAAGAGTGATCCTAAATGCAGCCAGTCATTGGCAAGGCTTATCAGCCTGCATCAGAAAGGGGATTATAGCCCTCAA
TCCCTGTTGGAAATGATAGCCTTGCATTTAGATGCTGTCTTTGTGGAATATGATACTTGGAGAGAGTTTGCTTTGTGCTTTTTTAAAGTCTCTCTGAGTG
AAGAGGATGAGATGTCAGTTTGTCAGCATGGAAATGAAGGTGAAAAAAGGCAATCCTATTCTGTTTGTTATAATGGAATCCCTAAAATGTTTACCCAGGG
GAAGTCAGTAGGACTTTGGAGGTCTCGCTGCAGATGGTGGTCAACTCGTCATTTCAGCAAGAGCATCCTTGCATCAGAAATTGATGCCGGTGATTGGCAG
CTCCTAACTTACAAGGCAGCATGTGCGTCCCACATGTATGGACAGGACTTCGGGTATGTTGCCAAGGCTTATACTTGCATACAAAAGGAAAATAACAGGG
ACTTGTCAATGTTTTTGCGACAGCACATGCAGAATTCCCTCGGACTCTATTCACAGCTCCAAAGAGGGAATAACTAA
AA sequence
>Potri.012G106300.3 pacid=42783668 polypeptide=Potri.012G106300.3.p locus=Potri.012G106300 ID=Potri.012G106300.3.v4.1 annot-version=v4.1
MCLHVETAENLPMGDEASGSKALESPPVKLALEVDAKKSKKRKRRTHCSTMVANDCHITKLEKSYTRVMLSLTKPSYLLGLGSNFIRHENRMRLFHLLQK
LVRQHNWTEAAGVLSVFLRATCKDKSPILNRFKYTVSLDLLKHIEGDDVSLSAISSIYDTWMARIGTNLSNTRNKDEQMKEDSFVVRLQFILSRVMQGDI
EAERHNVKILMEERGYENHPFFNMILGLISSQLWYSSLPEEMQWKDTFQIHSPTHSDMPATPSQLEMSAMRFSHEVGDSERHNAICNEESGASFHCDSET
SVMKDKEISVEVDGSFNREALPVEVGKLHKENLQKDFQPQGFYVNSAESDASFDNNGGHMHLVPNPTAFENSGSWLLPLRTGNWDLDQIVRDEEYRNAVK
YLQEAVHSTPPVPAALLPLVQLLLIGCKDKEALDEIEKFCANSSGALPKRMKANILEHVDPNNSVVLATCYEDTLKSDPKCSQSLARLISLHQKGDYSPQ
SLLEMIALHLDAVFVEYDTWREFALCFFKVSLSEEDEMSVCQHGNEGEKRQSYSVCYNGIPKMFTQGKSVGLWRSRCRWWSTRHFSKSILASEIDAGDWQ
LLTYKAACASHMYGQDFGYVAKAYTCIQKENNRDLSMFLRQHMQNSLGLYSQLQRGNN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G53200 unknown protein Potri.012G106300
[exp]
0 1
AT1G77010 Pentatricopeptide repeat (PPR)... Potri.002G075200
[exp]
12.04 0.7402
AT2G44680 CKB4 casein kinase II beta subunit... Potri.002G139900
[exp]
17.60 0.6157 CKB3.2
AT3G11960 Cleavage and polyadenylation s... Potri.006G197200
[exp]
18.54 0.7157
AT1G73110 P-loop containing nucleoside t... Potri.003G187601
[exp]
24.57 0.6705
AT5G24350 unknown protein Potri.015G008500
[exp]
26.77 0.6833
AT5G42140 Regulator of chromosome conden... Potri.005G190000
[exp]
27.96 0.6112
AT5G27970 ARM repeat superfamily protein... Potri.013G035100
[exp]
34.29 0.6441
AT4G27220 NB-ARC domain-containing disea... Potri.011G127300
[exp]
36.46 0.6674
AT2G16950 ATTRN1 transportin 1 (.1.2) Potri.004G177700
[exp]
36.74 0.6438
AT4G14590 EMB2739 embryo defective 2739 (.1) Potri.001G277200
[exp]
36.91 0.6165

Potri.012G106300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.