Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13980 1437 / 0 Glycosyl hydrolase family 38 protein (.1.2.3) AT3G26720 1387 / 0 Glycosyl hydrolase family 38 protein (.1.2) AT5G66150 1192 / 0 Glycosyl hydrolase family 38 protein (.1) AT5G14950 254 / 4e-70 GMII, ATGMII golgi alpha-mannosidase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143600 [exp] 1528 / 0 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 1439 / 0 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Potri.007G056300 [exp] 1280 / 0 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.001G350400 [exp] 281 / 3e-79 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.017G073900 [exp] 266 / 8e-74 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 62 / 8e-10 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.012G106401 [exp] 80 / 3e-08 AT5G13980 71 / 1e-10 Glycosyl hydrolase family 38 protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012577 [exp] 1367 / 0 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012578 [exp] 1347 / 0 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10035111 [exp] 1326 / 0 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10036074 [exp] 1232 / 0 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10041516 [exp] 1229 / 0 AT5G13980 1347 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10025960 [exp] 914 / 0 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10014259 [exp] 902 / 0 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10039457 [exp] 271 / 8e-76 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10014507 [exp] 253 / 1e-69 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1) Lus10015337 [exp] 246 / 5e-67 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [poplar] [flax] GH_CE PF01074 [poplar] [flax] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [poplar] [flax] Gal_mutarotase PF07748 [poplar] [flax] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [poplar] [flax] GH57_38_middle PF09261 [poplar] [flax] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Potri.012G106500.1 pacid=42782761 polypeptide=Potri.012G106500.1.p locus=Potri.012G106500 ID=Potri.012G106500.1.v4.1 annot-version=v4.1 ATGGGAGTTGTTCAGACATGTTTTCTGTTTGTGCTAGTGAGTTTGTTGTGTGTGGAATCAAAGTACATAAAGTATGATACAAGTTCAGTTATTGTTCCTG GGAAGATTAATGTTCACTTGGTGGCTCATACCCATGATGATGTTGGCTGGTTAAAGACTGTTGATCAGTACTATGTTGGGTCTAACAATTCCATTCAGGG TGCTTGTGTTCAAAATGTGCTGGATTCTATAGTGCCTGCATTGTTGGCTGATAAGAATAGAAAGTTCATATATGTTGAGCAGGCCTTCTTCCAGCGTTGG TGGAGAGATCAGAGCGAGGAAGTGCAAAATGTAGTCAAGCAGCTTGTCATCTCGGGTCAGCTTGAGCTAATAAATGGAGGTATGTGCATGCATGATGAGG CAGCTCCACATTATATTGACATGATTGATCAAACAACTCTGGGGCATCAATTCATCAAGGAAGAATTTAATGTGACTCCAAGAATTGGCTGGCAAATTGA TCCCTTTGGACATTCTGCAGTGCAGGCTTACCTGTTGGGGGCAGAGGTTGGATTTGACTCCTTTTTCTTTGGAAGAATTGACTATCAAGATAGAACAAAA CGAAAAGGTGATAAGAGTCTCGAGGTTGTCTGGCGAGGATCTAAAAGCCTTGGTTCATCTGCACAGATATTTGCCGGTGCATTCCCTCAGAATTATGAAC CTCCAAGTAACCTCTACTATGAAGTTAATGATGATTCCCCTATTCTCCAGGATAACCCCAATTTGTTTGATTACAATGTCGCTGAGCGAGTGAATGAGTT CGTATCAGCTGCAATGGATCAAGCTAATATAACTCGGACAAATCATGTGATGTGGACTATGGGGACGGATTTCAAGTACCAGTATGCTCACACTTGGTAC AAGCAAATGGACAAGTTCATTCACTATGTAAATCAGGATGGGCGTGTCAATGCCCTATACTCAACCCCATCAATATATACTGATGCAAAATATGCAACAA ATGAGTCCTGGCCTCTTAAGACTGACGATTTCTTTCCATATGCAGACAGTGCAAATGCTTATTGGACTGGATATTTTACGAGCAGGCCAGCCCTCAAAGG CTATGTTAGAAAGATGAGTGGCTACTATTTGGCAGCAAGGCAATTGGAGTTTTTCAAGGGAAGGAGTAAAGCAAGAACCAACACAGATTCTCTGGCTGAT GCTTTAGCTATTGCTCAACATCATGATGCAGTTAGTGGCACGTCAAAGCAGCATGTGGCAAATGATTATGCCAAGCGGCTCGCAATAGGATATGCGGAGG CTGAAGAGGTGGTTGGAGAATCACTTTCCTGTATTGCAGAATCGGCATCAAAAGGAGGTTGCATGAGTCCAACGAACAAGTTCCAACAGTGTCTCCTTCT GAATATAAGTTACTGCCCTCCATCAGAAGTTGATCTTTCAAATGGAAAGAGCCTGGTGGTTGTTGTCTACAATTCCTTAGGATGGAAAAGAGAGGATGTT ATAAGGATTCCTGTTATTAATGAGAATGTGGCTGTTAAGGATGCTGGAGGAAAAGAAATTGAATCGCAGCTCTTACCTCTGCTGAAGGCCTCTGTAGGCA TAAGGGACTACTATTCGAAGGCATATTTGAGCATGGCCTCAAATGTAACCCCCAAGTACTGGCTTGCATTTACAGCATCTCTACCACCTCTTGGTTTCAA CACTTACATTATTTCCAGTTCCAGCTCAACTGCTAAGCGAGCAGCTTCTACTTCAAGCCAATTATATGACACAAAAGCGAGTCAAAACGATACAGTTGAA ATAGGACCAGGGAACTTAAAATTGATCTATTCCGGGAAAGGAGAGCTTACTCAGTATATCAACAGCAGGAGCTTGGTCAAGGCATCTGTAGAGCAATCAT ATAGTTATTATGCTGGAGATAATGGAAGCAAGGATAAACAGGCCTCTGGAGCATACATCTTCCGACCAAATGGCACATATTCCATCAACTCTGAAGGACA GGATGTTTTTACTGTTTTGCGTGGACCTTTATTGGATGAAGTGCACCAGCAGATCAGTTCGTGGATATATCAGATAACCAGAGTTTACAAGGGAAAAGAG CATGCTGAAGTTGAGTTTACTGTTGGGCCAATACCTATTGAAGATGGAATCGGCAAAGAGGTTGTAACGAAGATCACAACAACTGTGAAAAACAACAAAA AGTTTTATACAGATTCTAGTGGGCGTGATTTCATAGAAAGGGTTCGAGACTACAGAAAAGACTGGGAACTGCAAGTGAACCAACCTATTGCAGGAAATTA TTACCCTATTAATCTCGGGCTTTATATGCAAGATAATAGCTCAGAGTTCTCCGTCCTAGTTGATCGATCTGTGGGGGGATCAAGTATTGTGGATGGGCAG TTGGAATTAATGCTCCACAGGAGGTTACTTTTTGATGATGCCAGAGGTGTTGGAGAGGCACTAAATGAAACAGTTTGTGTTCTTGAAGATTGCAGAGGAT TGACCATTGTAGGAAAGTACTTCCTCAGAATAGATCCTTTACGAGAGGGTGCCAAGTGGCGTCGATCATATGGTCAAGAGATATATTCTCCCTTACTCTT AGCCTTCGCAGAGCAGGATGGAGATAGTTGGGCAAGCTCTCATATAGCAACCTTTTCCGCAATGGACCCCTCTTATGCTCTACCTGACAATGTTGCGATA TTAACCCTCCAGGAGTTGAATGATGGAAAGGTTCTCCTTCGGTTAGCACACTTATATGAGGTTGGGGAGGACAAGGATCTGTCAGTAATGGCAAGTGTAG AACTGAAAAGGGTGTTCCCAAATAAGAAGATCAGCAAGATAACAGAGACAAGTTTATCAGCCAACCAAGAAAGAGTAGAAATGGAGAAGAAGAGGCTAGT CTGGAAAGTAGAAGGCTCTTCAGGAGAAGAACCTAAAGTGGTGAGGGGAGGACCTATCGATCCAACAACACTAGTTGTTGAACTAGCCCCAATGGAAATT CGTACCTTCCATATCACCTTTGATTAA
AA sequence Show only first row Show all	>Potri.012G106500.1 pacid=42782761 polypeptide=Potri.012G106500.1.p locus=Potri.012G106500 ID=Potri.012G106500.1.v4.1 annot-version=v4.1 MGVVQTCFLFVLVSLLCVESKYIKYDTSSVIVPGKINVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPALLADKNRKFIYVEQAFFQRW WRDQSEEVQNVVKQLVISGQLELINGGMCMHDEAAPHYIDMIDQTTLGHQFIKEEFNVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSFFFGRIDYQDRTK RKGDKSLEVVWRGSKSLGSSAQIFAGAFPQNYEPPSNLYYEVNDDSPILQDNPNLFDYNVAERVNEFVSAAMDQANITRTNHVMWTMGTDFKYQYAHTWY KQMDKFIHYVNQDGRVNALYSTPSIYTDAKYATNESWPLKTDDFFPYADSANAYWTGYFTSRPALKGYVRKMSGYYLAARQLEFFKGRSKARTNTDSLAD ALAIAQHHDAVSGTSKQHVANDYAKRLAIGYAEAEEVVGESLSCIAESASKGGCMSPTNKFQQCLLLNISYCPPSEVDLSNGKSLVVVVYNSLGWKREDV IRIPVINENVAVKDAGGKEIESQLLPLLKASVGIRDYYSKAYLSMASNVTPKYWLAFTASLPPLGFNTYIISSSSSTAKRAASTSSQLYDTKASQNDTVE IGPGNLKLIYSGKGELTQYINSRSLVKASVEQSYSYYAGDNGSKDKQASGAYIFRPNGTYSINSEGQDVFTVLRGPLLDEVHQQISSWIYQITRVYKGKE HAEVEFTVGPIPIEDGIGKEVVTKITTTVKNNKKFYTDSSGRDFIERVRDYRKDWELQVNQPIAGNYYPINLGLYMQDNSSEFSVLVDRSVGGSSIVDGQ LELMLHRRLLFDDARGVGEALNETVCVLEDCRGLTIVGKYFLRIDPLREGAKWRRSYGQEIYSPLLLAFAEQDGDSWASSHIATFSAMDPSYALPDNVAI LTLQELNDGKVLLRLAHLYEVGEDKDLSVMASVELKRVFPNKKISKITETSLSANQERVEMEKKRLVWKVEGSSGEEPKVVRGGPIDPTTLVVELAPMEI RTFHITFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13980			Glycosyl hydrolase family 38 p...		Potri.012G106500 [exp]	0	1
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Potri.012G101100 [exp]	5.09	0.9214
AT1G17285			unknown protein		Potri.001G162300 [exp]	7.41	0.9001
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.001G114000 [exp]	8.36	0.9071
AT3G09780		CCR1, ATCRR1	CRINKLY4 related 1 (.1)		Potri.016G089200 [exp]	8.48	0.8714
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.002G051200 [exp]	9.94	0.8727
AT2G28490			RmlC-like cupins superfamily p...		Potri.009G054700 [exp]	10.24	0.9052
AT4G18820			AAA-type ATPase family protein...		Potri.004G061700 [exp]	11.31	0.8934
AT5G37660		PDLP7	plasmodesmata-located protein ...		Potri.004G086000 [exp]	21.44	0.8785
AT1G70940		PIN3, ATPIN3	ARABIDOPSIS PIN-FORMED 3, Auxi...		Potri.008G129400 [exp]	21.95	0.8205	PIN3.2,PIN6
AT3G50160			Plant protein of unknown funct...		Potri.016G039100 [exp]	26.73	0.8906

Compare expression of checked genes

Potri.012G106500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.