Plant FIBer expression Database

Potri.012G106600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G25080 452 / 1e-161 CHLM magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
AT3G20020 41 / 0.0009 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G105702
[exp]
255 / 8e-85 AT4G25080 217 / 5e-71 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016730
[exp]
459 / 6e-164 AT4G25080 469 / 3e-168 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
Lus10036021
[exp]
457 / 2e-163 AT4G25080 472 / 5e-169 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
Lus10016728
[exp]
456 / 1e-162 AT4G25080 470 / 2e-168 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
Lus10010162
[exp]
43 / 0.0002 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
Lus10017367
[exp]
42 / 0.0007 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF12847 Methyltransf_18 Methyltransferase domain
Representative CDS sequence
>Potri.012G106600.2 pacid=42783528 polypeptide=Potri.012G106600.2.p locus=Potri.012G106600 ID=Potri.012G106600.2.v4.1 annot-version=v4.1
ATGGCATTTACATCCTCAATATTCTCTCACATTCCTTTAAGCAACCAAAGAATATTCCCTCCAAATTCTCATAAACCAAAACCACCCAGAACCACCGTCA
CCACCGCTGCACTTCCGCCTCTCGCCGCCGTCACTGCCGCTGACCTCGACGGAACCACCTTGGCTGTCATCGGAGGCGGGTCAGTGGCGGCTTTAGCTGC
CGCCATATCACTCACCGACCCCGAAAGGCGGCGGCGCCTCCAGGCGGAAGAGGTGGGCGGCGGAGACAAGGAGGTGGTGAGGGAGTACTTCAACAATTCT
GGGTTTCAACGGTGGAGAAAAATTTATGGAGAGACTGATGAGGTTAATAGAGTGCAGAAAGATATTAGGCTTGGTCATTCACAGACTGTTGAGAATGTGC
TGAAGATGTTGAAAGATGAAGGGTCGTTGGAGGGTGTAAGTGTTTGTGATGCTGGGTGTGGTACTGGGTGTTTGGCCATACCCTTGGCGAAAGAAGGGGC
GGCTGTTTATGCTAGTGATATTTCGGCTGCCATGGTGGCTGAGGCTGAGAAACAGGCAAAAGAGCAGCTTCAAGCAGGAAGTGAAAAGGAGTTGGTGATG
CCAAAATTTGAAGTGAAGGATTTAGAGAGTTTAAATGGGAAGTATGACACAGTGGTCTGTCTAGATGTTCTGATACATTACCCACAAAGTAAAGCAGATG
GGATGATCGCCCATCTTGCATCATTGGCTGAGAATCGACTACTTTTGAGTTTTGCTCCGAAGACATTTTACTATGATCTGTTAAAGAGAGTAGGGGAGTT
GTTTCCTGGGCCTTCAAAGGCAACAAGAGCATATTTACATGCAGAGGCAGATGTAGAGAGGGCATTGAAGAAGGTTGGGTGGAAAATAAGGAAGAGAGGC
CTGGTTACTACTCAATTCTACTTTGCAAGACTCGTCGAAGCTATTCCTGCATAA
AA sequence
>Potri.012G106600.2 pacid=42783528 polypeptide=Potri.012G106600.2.p locus=Potri.012G106600 ID=Potri.012G106600.2.v4.1 annot-version=v4.1
MAFTSSIFSHIPLSNQRIFPPNSHKPKPPRTTVTTAALPPLAAVTAADLDGTTLAVIGGGSVAALAAAISLTDPERRRRLQAEEVGGGDKEVVREYFNNS
GFQRWRKIYGETDEVNRVQKDIRLGHSQTVENVLKMLKDEGSLEGVSVCDAGCGTGCLAIPLAKEGAAVYASDISAAMVAEAEKQAKEQLQAGSEKELVM
PKFEVKDLESLNGKYDTVVCLDVLIHYPQSKADGMIAHLASLAENRLLLSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALKKVGWKIRKRG
LVTTQFYFARLVEAIPA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G25080 CHLM magnesium-protoporphyrin IX me... Potri.012G106600
[exp]
0 1
AT4G35250 NAD(P)-binding Rossmann-fold s... Potri.004G183100
[exp]
1.41 0.9808
AT2G01918 PQL3 PsbQ-like 3 (.1) Potri.017G129700
[exp]
2.23 0.9747
AT5G64040 PSAN, PSI-N photosystem I reaction center ... Potri.007G105900
[exp]
4.47 0.9779
AT3G50820 OEC33, PSBO2, P... OXYGEN EVOLVING COMPLEX SUBUNI... Potri.007G033700
[exp]
4.89 0.9772 PSBO.2
AT3G25920 RPL15 ribosomal protein L15 (.1) Potri.008G121100
[exp]
5.47 0.9737
AT5G18660 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B R... Potri.008G204900
[exp]
5.91 0.9725
AT3G56650 Mog1/PsbP/DUF1795-like photosy... Potri.006G034300
[exp]
6.00 0.9692
AT5G08280 HEMC hydroxymethylbilane synthase (... Potri.007G072500
[exp]
6.48 0.9509
AT2G06520 PSBX photosystem II subunit X (.1) Potri.006G222300
[exp]
6.63 0.9759
AT1G31920 Tetratricopeptide repeat (TPR)... Potri.001G135400
[exp]
8.66 0.9627

Potri.012G106600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.