Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48880 55 / 2e-08 RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G373900 [exp] 62 / 1e-10 AT3G48880 50 / 7e-07 RNI-like superfamily protein (.1.2) Potri.012G137700 [exp] 61 / 3e-10 AT3G48880 389 / 1e-136 RNI-like superfamily protein (.1.2) Potri.015G139700 [exp] 55 / 2e-08 AT3G48880 386 / 2e-135 RNI-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027450 [exp] 60 / 8e-10 AT3G48880 434 / 2e-154 RNI-like superfamily protein (.1.2) Lus10005745 [exp] 57 / 7e-09 AT3G48880 431 / 4e-153 RNI-like superfamily protein (.1.2) Lus10038528 [exp] 46 / 2e-05 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10023277 [exp] 45 / 4e-05 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G106700.1 pacid=42782818 polypeptide=Potri.012G106700.1.p locus=Potri.012G106700 ID=Potri.012G106700.1.v4.1 annot-version=v4.1 ATGGCAATGTGGTTAAAGAAACGGTCTCGAAAACTGCCAATGTCACCGGTGTTACCCCTACCACCGCCACCGGTACCGGAGATGCAACAACAAAGTGGCG ACAACATGTATAGTTTATCAACAAGGCGTAACCACAAGAAGGCAAAACTACAAGAAGTAGTTGCGAAGACTTGTCAAATTAGAAGTTGGAATGAAATGGA CCATGACATATTGGTTATGATAATGAACAAGTTAGTGAAATCACTTGGGTGGCGGACATTGGATGATAATACCATGTATTTCTGCAAGCCATGGCTGTTG GCCCTCCTCGATGCTCTCTTTCCTCCTGGAACAACTCTTGATCTCCATTCCTATGACAAATTTCCACCAGATAGTTATTGCAATCGTGCACGTGGAAGGT ATTTTTTTCTTCTCCACTTGGCGCTTGGTCCTTTTCGACCTCAAAACCATTACACCAAGGTTTTGTTTGGCGAATTACCCGCTGATTTCTTTCCATGGGA ATATTTTGGTTCAAGGTTGCCTTTGGTAAGAAGTATCTCATTTCCTACTACTAGCATCGACCAATTTTTTGTTGTAGGGGCACTTCTACCCTGGAGAAAT TTGAAAGAAGTGTGCTGCAATGATACAATAGTTAAGTGTCTTGCTAAATTCTGCAAGCGTATTCATAGTCTAACCCTTTTTGGGCGCATAAGCTCTCCCA CTGCTTCTTTGATTGCAGAAAACTTCCCTGCACTAAAGCGTTTGGTGATTTCATCGTGTGTTTTGTCAGTCAATGCATTGCCAACTATTTTGGATGGGCA AAAGAAACTTGAATATCTAGATACTAGCCATTGTTTTTGTGTTGATGAGAAACATTTGTATAAAAAACAGGTGAGGGCAAAGGAATGGAAAGAAGAGATA TATGTGAAGGCCGCAAAAAATATCAAAATACATTTGCAATGTGCAAGGGAAAACTGTCCTCCTTGTTCTCACCTGTATAGATAG
AA sequence Show only first row Show all	>Potri.012G106700.1 pacid=42782818 polypeptide=Potri.012G106700.1.p locus=Potri.012G106700 ID=Potri.012G106700.1.v4.1 annot-version=v4.1 MAMWLKKRSRKLPMSPVLPLPPPPVPEMQQQSGDNMYSLSTRRNHKKAKLQEVVAKTCQIRSWNEMDHDILVMIMNKLVKSLGWRTLDDNTMYFCKPWLL ALLDALFPPGTTLDLHSYDKFPPDSYCNRARGRYFFLLHLALGPFRPQNHYTKVLFGELPADFFPWEYFGSRLPLVRSISFPTTSIDQFFVVGALLPWRN LKEVCCNDTIVKCLAKFCKRIHSLTLFGRISSPTASLIAENFPALKRLVISSCVLSVNALPTILDGQKKLEYLDTSHCFCVDEKHLYKKQVRAKEWKEEI YVKAAKNIKIHLQCARENCPPCSHLYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48880			RNI-like superfamily protein (...		Potri.012G106700 [exp]	0	1
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.008G113900 [exp]	1.00	0.8863
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.007G086600 [exp]	1.73	0.8828
AT1G18340			basal transcription factor com...		Potri.005G176600 [exp]	4.24	0.8596
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	4.47	0.8797
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.011G023401 [exp]	5.91	0.8609
AT4G30850		HHP2	heptahelical transmembrane pr...		Potri.018G102400 [exp]	10.95	0.8149
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	12.72	0.8424
AT1G66170		MMD1	MALE MEIOCYTE DEATH 1, RING/FY...		Potri.017G135200 [exp]	12.72	0.7606
					Potri.003G025350 [exp]	14.49	0.7901
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.018G003300 [exp]	15.00	0.8356

Compare expression of checked genes

Potri.012G106700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.