Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57790 57 / 7e-09 F-box family protein (.1) AT4G00893 55 / 2e-08 unknown protein AT4G12370 52 / 2e-07 unknown protein AT4G10660 52 / 3e-07 CDC68-related (.1) AT4G10695 49 / 1e-06 CDC68-related (.1) AT3G18720 47 / 1e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G127700 [exp] 53 / 2e-07 AT5G55150 56 / 2e-08 Protein of unknown function (DUF295) (.1) Potri.006G015601 [exp] 52 / 3e-07 AT4G22660 59 / 3e-09 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.016G079300 [exp] 45 / 3e-05 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.001G054200 [exp] 45 / 3e-05 ND / Potri.006G212600 [exp] 43 / 0.0002 AT1G57790 294 / 2e-97 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004476 [exp] 72 / 1e-13 AT1G57790 92 / 4e-20 F-box family protein (.1) Lus10042359 [exp] 65 / 4e-12 ND / Lus10029943 [exp] 65 / 3e-11 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10014208 [exp] 55 / 3e-08 AT1G57790 286 / 2e-94 F-box family protein (.1) Lus10022706 [exp] 55 / 4e-08 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10024904 [exp] 50 / 1e-06 AT1G57790 97 / 2e-21 F-box family protein (.1) Lus10019203 [exp] 42 / 0.0003 AT2G24250 48 / 2e-06 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) Lus10021352 [exp] 42 / 0.0005 AT1G57790 292 / 1e-96 F-box family protein (.1) Lus10017027 [exp] 42 / 0.0005 AT1G57790 286 / 6e-93 F-box family protein (.1) Lus10029926 [exp] 40 / 0.0006 AT1G57790 72 / 4e-15 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [poplar] [flax] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Potri.012G106750.1 pacid=42782574 polypeptide=Potri.012G106750.1.p locus=Potri.012G106750 ID=Potri.012G106750.1.v4.1 annot-version=v4.1 ATGGAAGTTAATACCACGGAGGAGGAGGAGGAGCAAAGCTTGCAGTGTTGGCCACCAGCTGTAGGATTACTTCCATGTCTTGTTTTCTTCCATGGAAGTA GTGAAAAAGGCCAGACCTTTTATGACATCTCAGAATGTCGTTGCCACGTCAAAAACATTCCAGGGTTGCAAGGTAAACTAATAGGGACGTGCTCATATGG TTGGTTAGTCATAGCCGGAGATTCGATTTCAGATGATTGTTTTCTGTTGAATCCTATCTCTACGAAGAAGATTCAATTGCCGTCTTTGGCACCTGACTTC ACCTGGACAGATTGTGTCCTTTCATCGCCTCCTCATCGTCCCGAGTGTGTTGTCATGTTTTTGAATTTTGGTTATGGGATTCTCAACGTCAAGTCCTGCA AGCCTGGTGATGTTGAGTGGACAGGACAAGACTTAGAGCTTCATGATGAATGGTTTGATGACTCGGATTGTGGCGTATCAGTTGGAGTTCATAATGGAGA CATTTACATACTCACCTGCTATGAGCATCTCTACTCTGTCAAGTTTAACAAGTCTTGTGGCATTACATTAGTTGATCTGAAAGTGGATGATAGAACAAGT CCACTCACAAGGAAATTTCATAGTTACTGCCCAACATATCTGGTTGAAACATGCGGGGAGTTCCTTCGTGTTCATTGCTATATCCTTCATGGACAGCTGA TGGATATTTCGGTTTATAAATTAGATTTCAATGAGAGAGTTTGGATCAGAATAAAAAATTTGAAGGATCAAGCAATTTTTATAGGTTCCTCTGGGGCACA AGTTCTTGCTTGCTCCACAAAAGAATCAAGAATTCAAGGAAACAGAATCTATTTGACATTACCTGAAGATAGAACCCTATATGTGTATGATCTTGATTTG TGTGGTCTCGAGGTCTGTTTGCCATGCCCAAATGTGAAAGCTGATTGGATTCAAAATGATTGGATCTTACCTCTTTTCGAGGATAAATAG
AA sequence Show only first row Show all	>Potri.012G106750.1 pacid=42782574 polypeptide=Potri.012G106750.1.p locus=Potri.012G106750 ID=Potri.012G106750.1.v4.1 annot-version=v4.1 MEVNTTEEEEEQSLQCWPPAVGLLPCLVFFHGSSEKGQTFYDISECRCHVKNIPGLQGKLIGTCSYGWLVIAGDSISDDCFLLNPISTKKIQLPSLAPDF TWTDCVLSSPPHRPECVVMFLNFGYGILNVKSCKPGDVEWTGQDLELHDEWFDDSDCGVSVGVHNGDIYILTCYEHLYSVKFNKSCGITLVDLKVDDRTS PLTRKFHSYCPTYLVETCGEFLRVHCYILHGQLMDISVYKLDFNERVWIRIKNLKDQAIFIGSSGAQVLACSTKESRIQGNRIYLTLPEDRTLYVYDLDL CGLEVCLPCPNVKADWIQNDWILPLFEDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57790			F-box family protein (.1)		Potri.012G106750 [exp]	0	1
AT5G52960			unknown protein		Potri.016G123100 [exp]	4.89	0.9619
AT5G51030			NAD(P)-binding Rossmann-fold s...		Potri.015G108400 [exp]	4.89	0.9602
AT3G17790		ATACP5, ATPAP17...	purple acid phosphatase 17 (.1...		Potri.010G101900 [exp]	8.36	0.9616
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.010G202300 [exp]	8.48	0.9578
AT3G11310			unknown protein		Potri.002G200700 [exp]	11.83	0.9313
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Potri.014G012700 [exp]	11.91	0.9313
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.007G100500 [exp]	12.48	0.9643	Pt-NHX8.1
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.014G124100 [exp]	13.19	0.9346
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Potri.012G101100 [exp]	13.41	0.9415
AT1G50520		CYP705A27	"cytochrome P450, family 705, ...		Potri.009G065100 [exp]	14.86	0.9555

Compare expression of checked genes

Potri.012G106750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.