Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57790 100 / 5e-23 F-box family protein (.1) AT3G56470 75 / 1e-14 F-box family protein (.1) AT3G18720 71 / 3e-13 F-box family protein (.1) AT4G10660 64 / 5e-11 CDC68-related (.1) AT1G49360 64 / 6e-11 F-box family protein (.1) AT4G10695 61 / 2e-10 CDC68-related (.1) AT4G12370 57 / 7e-09 unknown protein AT4G00893 56 / 2e-08 unknown protein AT2G44735 44 / 0.0001 unknown protein AT4G12382 42 / 0.0001 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079300 [exp] 93 / 2e-20 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.006G212600 [exp] 78 / 1e-15 AT1G57790 294 / 2e-97 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024904 [exp] 166 / 2e-44 AT1G57790 97 / 2e-21 F-box family protein (.1) Lus10029943 [exp] 162 / 6e-44 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10004476 [exp] 159 / 6e-43 AT1G57790 92 / 4e-20 F-box family protein (.1) Lus10013738 [exp] 96 / 1e-21 AT1G57790 73 / 3e-14 F-box family protein (.1) Lus10021352 [exp] 94 / 5e-21 AT1G57790 292 / 1e-96 F-box family protein (.1) Lus10017027 [exp] 95 / 1e-20 AT1G57790 286 / 6e-93 F-box family protein (.1) Lus10014208 [exp] 92 / 4e-20 AT1G57790 286 / 2e-94 F-box family protein (.1) Lus10022706 [exp] 91 / 8e-20 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10019040 [exp] 81 / 7e-18 ND / Lus10019204 [exp] 78 / 1e-15 AT1G57790 79 / 2e-16 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [poplar] [flax] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Potri.012G106800.2 pacid=42783302 polypeptide=Potri.012G106800.2.p locus=Potri.012G106800 ID=Potri.012G106800.2.v4.1 annot-version=v4.1 ATGACGACGAATTTGCACGAAGGTGTTTGTGATCAAAAGAGATGTTGGTCTGATCTTCCTGGAGATATGGTAGCGTTGATTATTTCTCGTCTTCGTGCAC CAGATTGCTACTGTTTTGTTGCTGTTTGCAAGAGCTGGAGTTCGATTCCCCTCCCAAAATTCAAGAAAGAATTTCCAACACTGGTTTATTTAAAGTCTGA TGGTCAATTAATTAATTTCTTCAGCCCCTTACTCTGCTGCTCTACACCCGAAATAGCTAACTCCGTGTATAAGAATATTATTACTTCTGATACTACAAAA TTCAGCTCTGATATTGAAGACAATGAGCATGATCAGTGTTGCCAGAAAGGGGAGTCCGATCGCAGCCATTGCCATGAACCAAAAACAATTCGCTTCGCAA AACACGGGTGGTTGCTTGTCTCTCAGGGAAAACATGTTGTGTTTTTCCTCAATCCTATAACAAATCAAAGGATTGATCTTCCCGAGTTACCTCGAAGTGA AGTTGTTTTTGATGGAATTTCCTTTTCAGAATCTCCAACATCGCCTAATTGCACAGTCCTGGCCATCCATGTTCAAACCTATTGGGTATTCCCTACCTTC ATTCGTCGCGGCGAGGACAGTTGGACTTCGGATCCAATTTACATTGAATCAGGTTTCGTTCCATCTTATAGTAGTCCAGTCTTTCACAAGGGATGTTTTT ATTTTTTAGGACAGACTGGATGTCTGGCTGTTTTTGATCCAAAAATAGACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGGACGAAGA GGAGGAGGATGAGGAGGAGGAGTTGGATAAGTGGGCTGTGCTTGATAATCCTGGAAATCCATGTACTAGTAGTCCCATAAGCGACTGCTATTTAGTTGAT TGTAATGGAGAGCTAATGTCAGTTTTTGTGGGTTATATGGGACAATGGGTTAGAGTTTACATGCTTGATCCTTCGATTATGGTTTGGAAGGAAACAAAAG ACTTGGGTGATCGCGTGCTTTTTTTGAGCCGAATCGGATCAGGGCTGACAAAGACAACAGACCTGCAAGTTCCAGGGTTGGAAAACAGAATTTATTTTCC GAGGTTCAACAAGAAGGATGGCACGTGTGCATTCTATGATCTTTCGGCAGGTAAATTTCACACTTCTTGCAACAATCATGGCAGAGAAGATTATTATGGT ACCACAACTTTTTCGGATTGTGCATGGATTGAACCCAGTTATCGCATGCTCACTGACCAAGAGCTCGACTGGCTACATAAGGAGGCATCATGA
AA sequence Show only first row Show all	>Potri.012G106800.2 pacid=42783302 polypeptide=Potri.012G106800.2.p locus=Potri.012G106800 ID=Potri.012G106800.2.v4.1 annot-version=v4.1 MTTNLHEGVCDQKRCWSDLPGDMVALIISRLRAPDCYCFVAVCKSWSSIPLPKFKKEFPTLVYLKSDGQLINFFSPLLCCSTPEIANSVYKNIITSDTTK FSSDIEDNEHDQCCQKGESDRSHCHEPKTIRFAKHGWLLVSQGKHVVFFLNPITNQRIDLPELPRSEVVFDGISFSESPTSPNCTVLAIHVQTYWVFPTF IRRGEDSWTSDPIYIESGFVPSYSSPVFHKGCFYFLGQTGCLAVFDPKIDEEEEEEEEEEEQEEDEEEEDEEEELDKWAVLDNPGNPCTSSPISDCYLVD CNGELMSVFVGYMGQWVRVYMLDPSIMVWKETKDLGDRVLFLSRIGSGLTKTTDLQVPGLENRIYFPRFNKKDGTCAFYDLSAGKFHTSCNNHGREDYYG TTTFSDCAWIEPSYRMLTDQELDWLHKEAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	0	1
AT5G12260			unknown protein		Potri.012G121826 [exp]	1.00	0.9778
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127200 [exp]	2.64	0.9371
AT5G40645			RPM1-interacting protein 4 (RI...		Potri.001G338500 [exp]	3.16	0.9428
					Potri.004G071450 [exp]	4.47	0.9317
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	4.69	0.9303
AT5G17620			unknown protein		Potri.013G072300 [exp]	4.89	0.9447
AT3G53380			Concanavalin A-like lectin pro...		Potri.006G252666 [exp]	5.56	0.9112
AT2G37030			SAUR-like auxin-responsive pro...		Potri.016G091500 [exp]	6.32	0.9347
AT1G15890			Disease resistance protein (CC...		Potri.003G062100 [exp]	6.48	0.9192
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Potri.001G156200 [exp]	6.92	0.9233

Compare expression of checked genes

Potri.012G106800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.