Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39600 208 / 9e-71 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228566 [exp] 244 / 5e-85 AT5G39600 220 / 8e-76 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033166 [exp] 224 / 1e-74 AT5G39600 207 / 1e-67 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10780 [poplar] [flax] MRP_L53 39S ribosomal protein L53/MRP-L53
Representative CDS sequence Show only first row Show all	>Potri.012G106900.4 pacid=42783591 polypeptide=Potri.012G106900.4.p locus=Potri.012G106900 ID=Potri.012G106900.4.v4.1 annot-version=v4.1 ATGTTGAAGTTCCTCTCAAAGGTAAAAATTGAATTCAACGCACTAGACCCACGCGTAGCCTCATGTATGGAGTTCTTAGCTCAATGCAATGCCCGCAAGG CCAAAGAATCCAACCCTGCTTGCCAGGTTCTTGTCAAGCGCCGCACCGACGATTTCCCACCACAGATCACTGTTACTTTCGTCAATGGCGTCGAGGAAGC TTTCGATGCCACTTCTACTCCTGCACAGGCCATTAGGACTATGATTTTGGAAAAGGGTCAGCTTCTTGAGACCGAGCAAATGTTTCGTGAGGCTGGAGAG AAGTGGCCTGTTATTATCCCTGAAGAAGAGCTCCACCAGTTTGCTCCCGGTACTAAGGTTAGTGCTTGCTGGTTGTATTTGTTTTTGGTATTTTGA
AA sequence Show only first row Show all	>Potri.012G106900.4 pacid=42783591 polypeptide=Potri.012G106900.4.p locus=Potri.012G106900 ID=Potri.012G106900.4.v4.1 annot-version=v4.1 MLKFLSKVKIEFNALDPRVASCMEFLAQCNARKAKESNPACQVLVKRRTDDFPPQITVTFVNGVEEAFDATSTPAQAIRTMILEKGQLLETEQMFREAGE KWPVIIPEEELHQFAPGTKVSACWLYLFLVF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39600			unknown protein		Potri.012G106900 [exp]	0	1
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.003G180000 [exp]	1.73	0.8504
AT1G52730			Transducin/WD40 repeat-like su...		Potri.003G059500 [exp]	10.77	0.8097
AT2G37190			Ribosomal protein L11 family p...		Potri.018G146600 [exp]	11.26	0.8525	RPL12.2
AT5G16060			Cytochrome c oxidase biogenesi...		Potri.017G113401 [exp]	12.72	0.8130
AT3G62810			complex 1 family protein / LVR...		Potri.014G129800 [exp]	13.03	0.8071
AT5G52370			unknown protein		Potri.001G246800 [exp]	15.00	0.8150
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Potri.007G070000 [exp]	17.74	0.8070
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.015G098600 [exp]	18.38	0.8296
AT1G72370		AP40, RPSAA, RP...	40s ribosomal protein SA (.1.2...		Potri.001G164000 [exp]	19.18	0.8506
AT2G28430			unknown protein		Potri.004G210800 [exp]	20.24	0.8034

Compare expression of checked genes

Potri.012G106900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.