Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07290 749 / 0 AML4 MEI2-like 4 (.1) AT5G61960 746 / 0 AML1 MEI2-like protein 1 (.1.2) AT1G29400 287 / 1e-83 AML5 MEI2-like protein 5 (.1.2) AT2G42890 264 / 3e-75 AML2, MEI2 MEI2-like 2 (.1.2.3) AT4G18120 246 / 1e-69 AML3 MEI2-like 3 (.1.2) AT3G26120 131 / 2e-31 TEL1 terminal EAR1-like 1 (.1) AT1G67770 119 / 9e-28 TEL2 terminal EAR1-like 2 (.1) AT5G07930 91 / 7e-20 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT1G37140 78 / 8e-16 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT5G54900 64 / 2e-10 ATRBP45A RNA-binding protein 45A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106000 [exp] 1534 / 0 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.003G162700 [exp] 825 / 0 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.001G067300 [exp] 801 / 0 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.012G107900 [exp] 719 / 0 AT1G29400 288 / 2e-88 MEI2-like protein 5 (.1.2) Potri.002G059800 [exp] 508 / 2e-166 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.005G202000 [exp] 279 / 3e-80 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.010G051100 [exp] 139 / 9e-34 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.008G183000 [exp] 137 / 3e-33 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 101 / 9e-23 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043204 [exp] 964 / 0 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10032537 [exp] 913 / 0 AT5G61960 664 / 0.0 MEI2-like protein 1 (.1.2) Lus10020769 [exp] 539 / 1e-178 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10004591 [exp] 537 / 2e-177 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10007346 [exp] 533 / 6e-176 AT1G29400 779 / 0.0 MEI2-like protein 5 (.1.2) Lus10011968 [exp] 530 / 4e-175 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2) Lus10006234 [exp] 135 / 9e-33 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10036953 [exp] 135 / 2e-32 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10002046 [exp] 105 / 2e-23 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1) Lus10002047 [exp] 99 / 6e-23 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] RRM PF04059 [poplar] [flax] RRM_2 RNA recognition motif 2
Representative CDS sequence Show only first row Show all	>Potri.012G107100.3 pacid=42783288 polypeptide=Potri.012G107100.3.p locus=Potri.012G107100 ID=Potri.012G107100.3.v4.1 annot-version=v4.1 ATGCCGTTTGAAGTTATGGATCATAGGGGTAGTGCTACGGCATCTTCTCACTATTTCGAGGACATTCATTTGCCTGCTGAGAGACAAATTGGGTTTTGGA ATCCGAATACAATGCCTGATCACCAAGGCGGGCCACTATCAATGCATTATGCAGAGTTATCACAGTCAATCCTAGACAGAGATAAAAAAGAGAAGTCACT CATTAGTGAACAAGGAGCTAATATGTGCGAGCATGCATGGAGTTCTACGGATCATCATCCAAAATCCTGGTCAAGTTTGTCATTGCAACCGGCATCTTAT AGCAAGGGGAGAAGTAGGGCTGATATCAGTGCAGCCCAGTGGGAAAACAGTCTCTTCTCAAGCTCATTTTCTGAAATATTCAGCAGAAAGTTGAGGTTTT CAGGAAATGACATTCATTCTCATCAACCTGCTAAAACCATTACTTCCTCCAACGAGGAAGAAGAGCCCTTTGAATCTCTTGAAGAACTTGAGGCGAAAAC TATTGGAAATCTCCTCCCTCCTGAAGATAACATGTTTTCTGGAGTGACTACTGAGTTGGGGCATGATGCTAAGAACAATAACTTGGATGATCTAGAAGAT TTTGACCTGTTCAGCAGTGGCGGAGGCATGGAATTAGAAGGGGAAGGGGGCCAAGGAAATTCAGGTCTCCTTGGGGGAGTTCCCATTGGTCAAGGGCACT CTAATGGTTCAACTGTTGTTGGACATCCTTCTAGAACGCTTTTTGTCAGAAACATCAATAGCAATGTTGAAGATTCTGAATTGAAGGCTATTTTTGAGCA ATTTGGAGATATCCGAACTCTTTATACAGCGTGCAAGCACCGTGGCTTTGTAATGGTTTCTTATTATGATATAAGAGCAGCTCGAAATGCAATGAATGCG CTTCAAAATAAACCATTGAGGTGTAGGAAACTTGACATTCACTATTCAATTCCAAAAGACAATCCATCAGAGAAAGATATGAACCAGGGCACTCTAGTGG TCTTCAACCTTGATTCCTCTATTTCAATTGATGAGCTTCACCAAATATTTGGTGTTTATGGGGAAATTAAAGAGATCCGTGAATCCCCACAAAGGCATCA TGATAAATTCATAGAGTATTATGACATTAGGGATGCAGATGCCGCCCTTTCTGCACTAAATAGGAGTGACATTGCTGGCAAGCAGATCAAGGTTGAATCA AGTCTCCCAGGGGGCACTAGAAGCTTGATGCAACAGTCTGAGCATAAGCAAACTGAACCACATCCTTTTCAAAGGCCTTTTAAAGACTTGTTGTCTGGAT CATTGGCCACATTTTCTCCTGGAGTATCAGCCTCCAGCTACATGGAAAACAGATCTACTCAGGTTTTACACTCTGCTATCCCATCACAGCTGGGTGCATT CACTGATCTTCATCGGAGTTCTAGTGTTTCAATTAACTTACCATCTCCAGTGACAGCAAGTGCTGCCAAACAAATCTCCATTAGTGAAATGAAGTTTGGC AACCAATGTATTCCAAGCACTCATCCTCATTCTTTGCCAGAGTATCATGATAGTTTAGCCAATACTATTTCATACAACTCTCCAGGCACTATCAGAGACA TGCCCAGCAGTTTCACTTCCAAAGTGGCAGAAGGAATCAACAGCTTACACATTCAAGGAGTAGGGTCAAATGGGCACCTGATGGAGCTTATTGGAGGGGT TTCTGGATCTCCTGGAGCTGGAAGCTGTTCTCTTCCCGGGCATCATTATGTATGGAAAAATTCCAAGTCAGGTCAGCAACATCCTTCAAGTGGCATGATT TGGCCAAATTCACCATCATTTGTCAATGGTGTTCATGCTCATCACCTCCCACACATGCCTGGATTTCCTAGAGGCCGTGCAGTTATGCTGAACTCTGCAC CTGCACCCCATCACATTGGATCAGCACCAGCTGTTAATCCTTCTCTGTGGGAGAGGCAGCACACATTTTCTGGGAAGTCTCCTGAAACTTCTAGTTTTCA CTTGGGTTCTCTTGGGAGTGTGGGTTTTCCTGGTAGCTCTCCACCACATCCAGTGGAAATTGCCTCCCACAACATTTTCTCCCATGTTGGTAGAAGTTGT ATGGACATGACTAAAGGCACCGTCCTGCCCTCTTCTCCACAGATGTGCCACATGTTCCCTGGGAGGAACTCAATGATTGCAATGCCAGCTTCATTTGGTT CTCATGAGCGTGTGCGGAATCTCTCACATCGTAGAATAGAATCTAATTCAAACCATTCAGATAAGAAACTATATGAACTTGATACTGATTGCATATTGCG TGGCGAAGACAGCCGAACCACATTGATGATAAAGAATATTCCAAACAAATATACTTCAAAGATGCTTCTGGCTGCAATTGATGATCAATGCCGAGGAACC TATGATTTTATTTACTTACCAATTGACTTCAAGAACAAATGCAATGTGGGCTATGCATTCATCAACATGATTGATCCTCAACAGATCATTCCATTCCATA AGGCGTTCAATGGCAAAAAGTGGGAGAAGTTCAATAGTGAAAAAGTAGCATCTCTTGCATATGCTCGGATTCAGGGAAAAGCTGCTCTTATTGCGCATTT CCAGAATTCAAGCTTGATGAGTGAGGATAAACGTTGTCGTCCTATACTCTTTCATACTGATGGTCCGAACGCTGGTGATCCGGAACCATTCCCTATGGGT ACTCATATTCGATCTAGGTTGGGTAAACCTCAATCCACTGGCAACGAGGAGAACCACCATAGTAGGAGCCCGTCCACTTTGGCAAATGAAGAGGACTCTC CAAATGGAATACACTCTACCTCGGGTTCTGATTATGTGGTTTTCTTTGGCCAAGACACTAACCCGAACCCTGTACGGGTGTAA
AA sequence Show only first row Show all	>Potri.012G107100.3 pacid=42783288 polypeptide=Potri.012G107100.3.p locus=Potri.012G107100 ID=Potri.012G107100.3.v4.1 annot-version=v4.1 MPFEVMDHRGSATASSHYFEDIHLPAERQIGFWNPNTMPDHQGGPLSMHYAELSQSILDRDKKEKSLISEQGANMCEHAWSSTDHHPKSWSSLSLQPASY SKGRSRADISAAQWENSLFSSSFSEIFSRKLRFSGNDIHSHQPAKTITSSNEEEEPFESLEELEAKTIGNLLPPEDNMFSGVTTELGHDAKNNNLDDLED FDLFSSGGGMELEGEGGQGNSGLLGGVPIGQGHSNGSTVVGHPSRTLFVRNINSNVEDSELKAIFEQFGDIRTLYTACKHRGFVMVSYYDIRAARNAMNA LQNKPLRCRKLDIHYSIPKDNPSEKDMNQGTLVVFNLDSSISIDELHQIFGVYGEIKEIRESPQRHHDKFIEYYDIRDADAALSALNRSDIAGKQIKVES SLPGGTRSLMQQSEHKQTEPHPFQRPFKDLLSGSLATFSPGVSASSYMENRSTQVLHSAIPSQLGAFTDLHRSSSVSINLPSPVTASAAKQISISEMKFG NQCIPSTHPHSLPEYHDSLANTISYNSPGTIRDMPSSFTSKVAEGINSLHIQGVGSNGHLMELIGGVSGSPGAGSCSLPGHHYVWKNSKSGQQHPSSGMI WPNSPSFVNGVHAHHLPHMPGFPRGRAVMLNSAPAPHHIGSAPAVNPSLWERQHTFSGKSPETSSFHLGSLGSVGFPGSSPPHPVEIASHNIFSHVGRSC MDMTKGTVLPSSPQMCHMFPGRNSMIAMPASFGSHERVRNLSHRRIESNSNHSDKKLYELDTDCILRGEDSRTTLMIKNIPNKYTSKMLLAAIDDQCRGT YDFIYLPIDFKNKCNVGYAFINMIDPQQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMSEDKRCRPILFHTDGPNAGDPEPFPMG THIRSRLGKPQSTGNEENHHSRSPSTLANEEDSPNGIHSTSGSDYVVFFGQDTNPNPVRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07290		AML4	MEI2-like 4 (.1)		Potri.012G107100 [exp]	0	1
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.008G123300 [exp]	2.00	0.7028
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Potri.004G181700 [exp]	5.65	0.6360	PtrEXLA1,EXLA1.2
AT4G38350			Patched family protein (.1.2)		Potri.005G251800 [exp]	5.91	0.6154
AT2G37180		PIP2C, PIP2;3, ...	RESPONSIVE TO DESICCATION 28, ...		Potri.016G089500 [exp]	9.53	0.6091	Pt-PIP2.2
AT5G24610			unknown protein		Potri.015G000900 [exp]	23.55	0.5970
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.006G222200 [exp]	24.45	0.5679
					Potri.015G020450 [exp]	26.94	0.6245
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	34.49	0.5977
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.002G079100 [exp]	38.47	0.5997
AT1G73165		CLE1	CLAVATA3/ESR-RELATED 1 (.1)		Potri.001G376100 [exp]	47.34	0.5728

Compare expression of checked genes

Potri.012G107100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.