Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08880 81 / 1e-19 unknown protein AT5G01570 57 / 1e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G122350 [exp] 127 / 9e-38 AT3G08880 124 / 2e-35 unknown protein Potri.012G107800 [exp] 54 / 3e-09 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012504 [exp] 87 / 4e-23 AT3G08880 109 / 2e-31 unknown protein Lus10022668 [exp] 85 / 4e-21 AT3G08880 157 / 9e-49 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G107200.1 pacid=42782746 polypeptide=Potri.012G107200.1.p locus=Potri.012G107200 ID=Potri.012G107200.1.v4.1 annot-version=v4.1 ATGGGCTCTATTCCATTTCTGTCACCGTACTTCAATGGATTCACCTTCTCTGCATTTTCCGACATCGACTACCAAAGTGTCATTTTTCTCCGTGGGAGGA TGCTTTCAATGTATGCATCTGTGACTAATATCATTCCAGACTTGGATGATCACTCCAAAATCTCTGGCCATATCGTGCATAGAGATAACAAGGCTGCTGA GAAATTTGAATTTGATCCGACAAAGATAAGTTCATTTGAAATATGTCAGAGCATTTGGGAGATGATACATAAGCAACAGATGTTTGGATATCTTCAGCTG GCTTGTGTGCTTCTACTTGGTTTTAATGCGTCTTTCTGTGATATACTTGGTCACTTATTTTGTAGGCGGTGGTCTTCTTTTGTTGAATGTATTTGGCTTT CGTCCCTTCAGATGTGA
AA sequence Show only first row Show all	>Potri.012G107200.1 pacid=42782746 polypeptide=Potri.012G107200.1.p locus=Potri.012G107200 ID=Potri.012G107200.1.v4.1 annot-version=v4.1 MGSIPFLSPYFNGFTFSAFSDIDYQSVIFLRGRMLSMYASVTNIIPDLDDHSKISGHIVHRDNKAAEKFEFDPTKISSFEICQSIWEMIHKQQMFGYLQL ACVLLLGFNASFCDILGHLFCRRWSSFVECIWLSSLQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08880			unknown protein		Potri.012G107200 [exp]	0	1
AT1G75720			Plant protein of unknown funct...		Potri.005G238500 [exp]	1.00	0.7990
AT2G44065			Ribosomal protein L2 family (....		Potri.017G007700 [exp]	1.73	0.7610
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.014G107300 [exp]	4.89	0.7635
AT2G35760			Uncharacterised protein family...		Potri.006G016900 [exp]	7.00	0.7420
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.019G056500 [exp]	7.34	0.7430
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.008G096200 [exp]	10.19	0.7014
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Potri.014G128400 [exp]	10.95	0.7296
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.017G140000 [exp]	11.61	0.7326	EXP2.10
AT5G41850			alpha/beta-Hydrolases superfam...		Potri.001G092800 [exp]	13.78	0.7082
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Potri.010G055100 [exp]	15.49	0.7154	MAD2.2

Compare expression of checked genes

Potri.012G107200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.