Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07080 206 / 8e-66 Thioredoxin superfamily protein (.1) AT5G01580 186 / 1e-58 OSH1 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12890 186 / 2e-58 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12960 174 / 7e-54 GILT, AtGILT gamma-interferon-responsive lysosomal thiol reductase, Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1), Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.2) AT4G12900 170 / 3e-52 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12870 167 / 3e-51 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G107600 [exp] 517 / 0 AT1G07080 204 / 2e-65 Thioredoxin superfamily protein (.1) Potri.016G122200 [exp] 486 / 3e-176 AT1G07080 204 / 3e-65 Thioredoxin superfamily protein (.1) Potri.016G121900 [exp] 202 / 7e-65 AT5G01580 263 / 3e-89 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Potri.009G076200 [exp] 201 / 7e-64 AT1G07080 278 / 3e-94 Thioredoxin superfamily protein (.1) Potri.006G103000 [exp] 191 / 6e-60 AT1G07080 196 / 3e-62 Thioredoxin superfamily protein (.1) Potri.001G281004 [exp] 184 / 1e-57 AT1G07080 266 / 8e-90 Thioredoxin superfamily protein (.1) Potri.016G122000 [exp] 179 / 7e-56 AT1G07080 185 / 3e-58 Thioredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042270 [exp] 213 / 1e-68 AT1G07080 285 / 5e-97 Thioredoxin superfamily protein (.1) Lus10026384 [exp] 213 / 1e-68 AT1G07080 281 / 1e-95 Thioredoxin superfamily protein (.1) Lus10022669 [exp] 202 / 7e-65 AT1G07080 170 / 2e-52 Thioredoxin superfamily protein (.1) Lus10012503 [exp] 191 / 2e-60 AT1G07080 171 / 1e-52 Thioredoxin superfamily protein (.1) Lus10002203 [exp] 188 / 3e-59 AT5G01580 238 / 2e-79 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Lus10022670 [exp] 150 / 1e-41 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10012502 [exp] 139 / 3e-37 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF03227 [poplar] [flax] GILT Gamma interferon inducible lysosomal thiol reductase (GILT)
Representative CDS sequence Show only first row Show all	>Potri.012G107300.1 pacid=42784137 polypeptide=Potri.012G107300.1.p locus=Potri.012G107300 ID=Potri.012G107300.1.v4.1 annot-version=v4.1 ATGGGCTCTTCTCCATTACTCTCTTTCCTTGTTCTCACTCTGATGTTCTTGTTCGTCACCCCTTCCCATTCTTCGGAGTACGATGCTGCTCAGGAACCAG CGCCTCCCTTTACGTCCAGGAAAATCTCTCGCAATTCTGAGAAAGTTACAATGTCTTTATATTATGAATCTCTTTGTCCATATTGCAGCAGTTTCATTGT AGGTCCCCTAGCTCAGGTCCTGGAGACTGATCTCATGACCATTCTCAATCTCAGACTGGTTCCATGGGGAAATGCTATTCTAGACTCCAACAGTACCATT GAGTGTCAGCATGGGGAAGATGAATGCTATCTGAACATCATACATACTTGTGCCATCAACCTCTGGCCTGATTTGAAGAAGCACTTCAATTTCATCAAGT GTATCGAAAAGCAATATAAAGCTCCTGATAGAAATGGAGCAGAAGAATCCTGGGAAGTATGTTCTGGTAAATTGAGACTGTCTACAAAATCCATTAAGAA ATGCTATGACAGTGGACATGGAAAAAAGCTTGTCCTACAAAATGGAAAAGAAACAGATCATCTCAGACCGCCTCACGAATACGTGCCATGGGTGGTTGTA GATGATACACCTCTCCTCGATGACTATGTGAATTTCATTCACTATGTTTGCAAGGCATACAAAGGCAAGTCTTTGCCCAAGACTTGCAGTTCACATCCCA ACACCTCAATTAACAAGGACACCTCACTCCAATCAGCCTGTCATGCAAGTGAAGCAATGTCAGGTGACAGTTCAGGGAAGCACCAGATGAAGATGGAACC CCTTGCATGA
AA sequence Show only first row Show all	>Potri.012G107300.1 pacid=42784137 polypeptide=Potri.012G107300.1.p locus=Potri.012G107300 ID=Potri.012G107300.1.v4.1 annot-version=v4.1 MGSSPLLSFLVLTLMFLFVTPSHSSEYDAAQEPAPPFTSRKISRNSEKVTMSLYYESLCPYCSSFIVGPLAQVLETDLMTILNLRLVPWGNAILDSNSTI ECQHGEDECYLNIIHTCAINLWPDLKKHFNFIKCIEKQYKAPDRNGAEESWEVCSGKLRLSTKSIKKCYDSGHGKKLVLQNGKETDHLRPPHEYVPWVVV DDTPLLDDYVNFIHYVCKAYKGKSLPKTCSSHPNTSINKDTSLQSACHASEAMSGDSSGKHQMKMEPLA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07080			Thioredoxin superfamily protei...		Potri.012G107300 [exp]	0	1
AT1G07080			Thioredoxin superfamily protei...		Potri.012G107600 [exp]	1.00	0.9821
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Potri.010G071400 [exp]	7.48	0.9749
					Potri.001G259224 [exp]	9.89	0.9717
AT3G55870			ADC synthase superfamily prote...		Potri.008G066600 [exp]	10.39	0.9734	Pt-ASA1.1,ASA%2C,pseudogene
					Potri.012G007445 [exp]	10.95	0.9738
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Potri.008G076900 [exp]	15.09	0.9324
AT1G79915			Putative methyltransferase fam...		Potri.001G181200 [exp]	16.12	0.8720
					Potri.016G020750 [exp]	16.24	0.9593
					Potri.012G007866 [exp]	16.43	0.9615
					Potri.012G008845 [exp]	17.43	0.9604

Compare expression of checked genes

Potri.012G107300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.