Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65030 442 / 2e-156 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 50 / 1e-06 transducin family protein / WD-40 repeat family protein (.1.2) AT2G46290 48 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT2G46280 45 / 3e-05 TIF3I1, TRIP-1 TGF-beta receptor interacting protein 1 (.1.2.3) AT3G18130 44 / 8e-05 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G80710 44 / 0.0001 DRS1 DROUGHT SENSITIVE 1 (.1) AT5G16750 44 / 0.0002 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT2G41500 43 / 0.0002 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G10580 43 / 0.0003 Transducin/WD40 repeat-like superfamily protein (.1) AT5G43920 42 / 0.0004 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172800 [exp] 45 / 4e-05 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G100101 [exp] 45 / 4e-05 AT2G46290 553 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G206600 [exp] 45 / 8e-05 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G064600 [exp] 44 / 0.0001 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G055800 [exp] 44 / 0.0001 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002700 [exp] 43 / 0.0003 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.012G052700 [exp] 42 / 0.0004 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 42 / 0.0004 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.012G076000 [exp] 42 / 0.0004 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025803 [exp] 462 / 8e-165 AT1G65030 447 / 1e-158 Transducin/WD40 repeat-like superfamily protein (.1) Lus10038299 [exp] 454 / 3e-161 AT1G65030 456 / 2e-162 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001046 [exp] 54 / 7e-08 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001411 [exp] 53 / 2e-07 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10009510 [exp] 44 / 9e-05 AT3G50390 245 / 1e-75 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030869 [exp] 44 / 0.0002 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 43 / 0.0002 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011699 [exp] 42 / 0.0004 AT3G50390 256 / 5e-80 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001951 [exp] 42 / 0.0007 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.012G107400.1 pacid=42782631 polypeptide=Potri.012G107400.1.p locus=Potri.012G107400 ID=Potri.012G107400.1.v4.1 annot-version=v4.1 ATGAGTCTAATAGCAGGTTCCTACGAGAAATTCATATGGGGTTTCAAACTCAAAACTTTAAAACACGAACCTTCTTCTCAAAACCTCACGCTAACCCCAC TTTTCTCCTATCAATCTCACCTCGCTCACATCACCTCCGCCGCCGCCGCCGGCCCCGCCGCCGCTTCTGGCTCTGCTGACGACACAATACACCTCTATGA CCTCCCTTCTGCTTCCTCCCTCGGCTCCCTCCACCAACACACCTCCTCCGTCACCTCTGTCACCTTCTTCACCCCTCCTTCCCTCTCTTTCCCTCGCAAC CTTCTCTCTGCCTCTGCTGATGGCTCCGTTTGCATTTTTGACACTGACCCTTTTGTCCACTTGAAGACTGTTTTGGTCCACAAGAAGGCCGTCAACGACC TCTCGGTGCACCCGTCTGGGAAGTTGGCGCTTACTGTTGGAAGAGATGAGTGTTTGGCGATGTTGAATTTGGTGAGAGGGAGAAGGAGCTTTTATTGTAG ATTGGGGAAGGAGGCCAGTTTGGTGAAGTTTGATTTGGGTGGGGAGAGGTTTTTTATGGTTACTGAGGAGAAAGTTGGGGTTCATGAGGCTGAAGATGCT AAATTGGTGACTGAATTTGAATGTCAGAAACGGGTTCTTTCTGCTGCTCCTGGAGAGAATGGACTTCTGTTCACTGGTGGTGAGGATCGGAGTATTACAG CATGGGATGTGAATAGTGGGAAGGTTGCATATTGCATTGATGATGCACATTCTGCCCGTGTGAAAGGTATCGTTGTGCTCATGAGGAATGACAGCACCGT GGATGATCCATATTTATTGGCATCTGCATCGTCCGATGGGGTTATACGTGTTTGGGATGTTCGCATGTCCATGAAAGAGAAGCCAAATCCATTGGCTGAG GCTAACACAAAATCAAGGCTGACGTGTCTTGCTGGATCATCTCATAATCTAAAACGACCGCAGATGGGAGCAAGCTGTTTAAAGGAAGATCCCGATGCAG CAGAGGGAGAATGA
AA sequence Show only first row Show all	>Potri.012G107400.1 pacid=42782631 polypeptide=Potri.012G107400.1.p locus=Potri.012G107400 ID=Potri.012G107400.1.v4.1 annot-version=v4.1 MSLIAGSYEKFIWGFKLKTLKHEPSSQNLTLTPLFSYQSHLAHITSAAAAGPAAASGSADDTIHLYDLPSASSLGSLHQHTSSVTSVTFFTPPSLSFPRN LLSASADGSVCIFDTDPFVHLKTVLVHKKAVNDLSVHPSGKLALTVGRDECLAMLNLVRGRRSFYCRLGKEASLVKFDLGGERFFMVTEEKVGVHEAEDA KLVTEFECQKRVLSAAPGENGLLFTGGEDRSITAWDVNSGKVAYCIDDAHSARVKGIVVLMRNDSTVDDPYLLASASSDGVIRVWDVRMSMKEKPNPLAE ANTKSRLTCLAGSSHNLKRPQMGASCLKEDPDAAEGE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65030			Transducin/WD40 repeat-like su...		Potri.012G107400 [exp]	0	1
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.007G028300 [exp]	1.00	0.9495
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Potri.007G071700 [exp]	1.41	0.9342
AT1G64600			methyltransferases;copper ion ...		Potri.001G086800 [exp]	5.00	0.8894
AT4G36680			Tetratricopeptide repeat (TPR)...		Potri.005G125400 [exp]	7.74	0.9095
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G138500 [exp]	8.12	0.9161
AT5G15300			Pentatricopeptide repeat (PPR)...		Potri.017G086100 [exp]	8.24	0.9197
AT2G37400			Tetratricopeptide repeat (TPR)...		Potri.016G080000 [exp]	14.07	0.9213
AT3G16260		TRZ4	tRNAse Z4 (.1)		Potri.001G186900 [exp]	14.38	0.8944
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.019G034300 [exp]	14.69	0.8800
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Potri.006G091000 [exp]	15.16	0.9196

Compare expression of checked genes

Potri.012G107400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.