Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31220 338 / 9e-117 Formyl transferase (.1) AT4G17360 66 / 6e-12 Formyl transferase (.1) AT5G47435 65 / 1e-11 formyltetrahydrofolate deformylase, putative (.1.2) AT1G66520 49 / 2e-06 PDE194 pigment defective 194, formyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G078000 [exp] 70 / 2e-13 AT5G47435 484 / 7e-174 formyltetrahydrofolate deformylase, putative (.1.2) Potri.001G156600 [exp] 70 / 2e-13 AT5G47435 476 / 2e-170 formyltetrahydrofolate deformylase, putative (.1.2) Potri.017G123300 [exp] 57 / 5e-09 AT1G66520 516 / 0.0 pigment defective 194, formyltransferase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013428 [exp] 384 / 1e-134 AT1G31220 326 / 4e-112 Formyl transferase (.1) Lus10040974 [exp] 373 / 1e-130 AT1G31220 327 / 3e-112 Formyl transferase (.1) Lus10028958 [exp] 68 / 1e-12 AT5G47435 498 / 3e-179 formyltetrahydrofolate deformylase, putative (.1.2) Lus10010978 [exp] 54 / 4e-08 AT1G66520 496 / 2e-177 pigment defective 194, formyltransferase, putative (.1) Lus10000450 [exp] 54 / 6e-08 AT1G66520 510 / 0.0 pigment defective 194, formyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00551 [poplar] [flax] Formyl_trans_N Formyl transferase
Representative CDS sequence Show only first row Show all	>Potri.012G107500.1 pacid=42782737 polypeptide=Potri.012G107500.1.p locus=Potri.012G107500 ID=Potri.012G107500.1.v4.1 annot-version=v4.1 ATGGAAGCTCAAAATTTGCTTTCTGGGTTTTTCCCAAACTACAAAATTCCATTAACCCGGACCTCTAAAAAACCCTTCTCTTGTTCTTTACCATCAAACC CTTCTTTTCACTCTTTGCTTCAATCCCACAATTGCGTCTCCTTCAAAACACACTATTCACCATGCTTTAAAGGGTCTTTGAAGAAGATATTTTTTTGTGT AAATGCTTCAGAAAATGCTGTTCTTGAAGAGAAAGATTACAAGAGGCCCCAGGTTGTTAAAAGGAAGAAGCTAGCTGTTTTCGTCTCTGGTGGTGGTTCA AACTTTAAGTCTATTCATGATGCTTGCTTCGAGGGGTTAGTTCATGGAGATATTGTTGTTTTGGTTACGAATAAACCTGATTGTGGAGGTGCAGAGTATG CAAAAAATAAGGAAATCCCTGTTGTTCTGTTTCCTCGAACAAAAGATGCTACTGATGGGTTATCTCCTAGTGACCTTGTTGCAGCTCTTAGGAGTCTTGA GGTTGACTTTATTCTTCTGGCTGGATATCTCAAACTTATACCAGCTGAGTTGATCCGAGCATATCCCCGATCCATATTGAACATCCATCCATCACTGCTT CCAGCTTTCGGTGGCAAAGGTTATTATGGTATGAAGGTGCATAAAGCAGTCATTGCTTCAGGAGCCAGATACTCAGGGCCAACCATCCACTTTGTTGATG AGCATTATGACACGGGGCGTATCCTGGCTCAAAGAGTTGTACCTGTGCTTGCAAATGACACTGCAGAGGAGCTAGCTGCAAGGGTACTCCATGAGGAGCA TCAGTTATATGTGGAGGTAACGGCTGCATTATGTGAAGAACGTTTAATTTGGAGGGAAGATGGTGTCCCTCTCATCCAAAATAGGGGAAACCCCAATGAA TACAGCTAA
AA sequence Show only first row Show all	>Potri.012G107500.1 pacid=42782737 polypeptide=Potri.012G107500.1.p locus=Potri.012G107500 ID=Potri.012G107500.1.v4.1 annot-version=v4.1 MEAQNLLSGFFPNYKIPLTRTSKKPFSCSLPSNPSFHSLLQSHNCVSFKTHYSPCFKGSLKKIFFCVNASENAVLEEKDYKRPQVVKRKKLAVFVSGGGS NFKSIHDACFEGLVHGDIVVLVTNKPDCGGAEYAKNKEIPVVLFPRTKDATDGLSPSDLVAALRSLEVDFILLAGYLKLIPAELIRAYPRSILNIHPSLL PAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLANDTAEELAARVLHEEHQLYVEVTAALCEERLIWREDGVPLIQNRGNPNE YS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31220			Formyl transferase (.1)		Potri.012G107500 [exp]	0	1
AT1G53460			unknown protein		Potri.001G376900 [exp]	2.64	0.9226
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.003G058300 [exp]	2.82	0.9449
AT5G23230		NIC2	nicotinamidase 2 (.1)		Potri.003G003300 [exp]	4.00	0.9214
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Potri.017G129800 [exp]	5.74	0.9312
					Potri.017G120301 [exp]	6.63	0.9307
AT3G06200			P-loop containing nucleoside t...		Potri.010G029400 [exp]	6.92	0.9358
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.004G002900 [exp]	8.12	0.9006
AT1G27510			Protein of unknown function (D...		Potri.012G079700 [exp]	10.67	0.8891
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Potri.001G217800 [exp]	14.76	0.8749
AT1G01840			unknown protein		Potri.002G153000 [exp]	15.09	0.9071

Compare expression of checked genes

Potri.012G107500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.