Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23490 546 / 0 Protein of unknown function (DUF604) (.1) AT5G41460 533 / 0 Protein of unknown function (DUF604) (.1) AT4G11350 532 / 0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT1G01570 520 / 0 Protein of unknown function (DUF604) (.1) AT1G07850 485 / 3e-168 Protein of unknown function (DUF604) (.1) AT4G00300 442 / 5e-148 fringe-related protein (.1.2) AT2G37730 388 / 2e-130 Protein of unknown function (DUF604) (.1) AT1G33250 364 / 1e-120 Protein of unknown function (DUF604) (.1) AT4G15240 339 / 1e-111 Protein of unknown function (DUF604) (.1) AT3G11420 322 / 7e-105 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131400 [exp] 566 / 0 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 555 / 0 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 522 / 0 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 389 / 6e-131 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 379 / 8e-127 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 376 / 6e-126 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G454600 [exp] 370 / 4e-123 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 361 / 2e-120 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 340 / 5e-112 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032293 [exp] 559 / 0 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 548 / 0 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 502 / 7e-175 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 495 / 5e-172 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10008293 [exp] 371 / 1e-123 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 369 / 2e-123 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10007923 [exp] 359 / 4e-120 AT4G11350 397 / 5e-135 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10024662 [exp] 340 / 3e-115 AT4G23490 441 / 5e-155 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 337 / 2e-111 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10033260 [exp] 332 / 5e-110 AT1G33250 546 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02434 [poplar] [flax] Fringe Fringe-like
Representative CDS sequence Show only first row Show all	>Potri.012G107800.2 pacid=42782605 polypeptide=Potri.012G107800.2.p locus=Potri.012G107800 ID=Potri.012G107800.2.v4.1 annot-version=v4.1 ATGAAGTTCAGGCAAAAATACCAACTTGGTGATCTAAGACCTTCACCCAGGCCCTTCCATTGCTCTCCTTCAAGAGCACTTCTATGGCTTTGCTTCTCAA TTTCTCTTCTCTACAACCTTTACATCTTGAATTTACTAGATTATTCAATGACTCCTAACAACATTAAACACTTTAATAAACCTTACATCCTCAGCATCGA AGAACATAAGAAAGCAGAAAATACAAGTCTTCATCACCTAGTTTTTGGCATTGCTGGATCTTCTCATACATGGAGCGAGAGGCAAAAGTGTATTCAGTTA TGGTGGAGACCTGATGAGATGAGGGGTGCAGTTTGGTTAGATCAGATAGTGAAAAATGGTACAAACGATCATCTTGTGCCCCAAATAAAAATCTCCAGTA ACACATCACCTTTCAAGTATGAAAATCCTATTGGCGACAGGTCTGCGATACGGTTGACAAGGATAGTGTCAGAGACCTTGAAGCTAAGCATGAAGGATGT GAGGTGGTTTGTGATGGGAGACGATGATACACTATTTTTTCCTGATAATTTGGTTAAGGTCTTATCAAAGTACGACCATAATCAGTATTATTATATAGGG AGCACATCAGAGAGTCACAAGCAGAATATAGTCTACAATTATGGTATGGCTTATGGTGGTGGTGGATTTGCTATAAGTTATCCTCTAGCAAAGGCTTTAG CAAAGATGCAAGATAGATGTATTGAGAGATATCCAGGTTTATATGGATCTGATGACAGGATTCATGCTTGTATGTCTGAGCTTGGTGTCCCTCTCACCAA TGAACGAGGGTTTCATCAGAATGATTTCTACGGCAACATATTTGGCATCCTTGCAGCTCATCCTATCACCCCTTTAGTCTCCCTCCACCACTACAAAGTG ACTAATGCAATATTTCCGCGCATGGATAAGTTAGAAGCCCTGGAAAAGCTTAGAGTTCCGGCCAAACTAGACTCTGCTGCACTCATGCAACAATCCATTT GCTACGACGCAGCACGAAATTGGACTATATCGGTATCTTGGGGCTATGCAGTTCAAATAATTCGGGGCATACTTCATCCACGAGAAATAGAAATGATAGC GAGGACATTTTACAGTTGGTATCAGACAGTTGAACGTGAAGGTTTCATATTCAACAACCGCCCCTATTACGAGCACGTATGTCAGAAGCCATTTGTGCAT TTCTTTTCTAATGCAACGTACAACAGCAGTACAGATCAGACACTCAGTGAATACATCAGGCATGATCATCGGTACCCACGTTGTGATTGGAAAATGGCCG ATCCTTTGCCAATAGCTCGAGTGGAGGTTCTAAAGAGACCTGACCCTTATGTATGGGATAGGGCTCCTAGAAGAAACTGTTGCAGGATCTTACCCACGGA GAAAAATGACACTTTGGTAGTCGATGTCGGAGAATGCAGAGAAGGTGAATCCATTGAAGTACGGTGA
AA sequence Show only first row Show all	>Potri.012G107800.2 pacid=42782605 polypeptide=Potri.012G107800.2.p locus=Potri.012G107800 ID=Potri.012G107800.2.v4.1 annot-version=v4.1 MKFRQKYQLGDLRPSPRPFHCSPSRALLWLCFSISLLYNLYILNLLDYSMTPNNIKHFNKPYILSIEEHKKAENTSLHHLVFGIAGSSHTWSERQKCIQL WWRPDEMRGAVWLDQIVKNGTNDHLVPQIKISSNTSPFKYENPIGDRSAIRLTRIVSETLKLSMKDVRWFVMGDDDTLFFPDNLVKVLSKYDHNQYYYIG STSESHKQNIVYNYGMAYGGGGFAISYPLAKALAKMQDRCIERYPGLYGSDDRIHACMSELGVPLTNERGFHQNDFYGNIFGILAAHPITPLVSLHHYKV TNAIFPRMDKLEALEKLRVPAKLDSAALMQQSICYDAARNWTISVSWGYAVQIIRGILHPREIEMIARTFYSWYQTVEREGFIFNNRPYYEHVCQKPFVH FFSNATYNSSTDQTLSEYIRHDHRYPRCDWKMADPLPIARVEVLKRPDPYVWDRAPRRNCCRILPTEKNDTLVVDVGECREGESIEVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23490			Protein of unknown function (D...		Potri.012G107800 [exp]	0	1
AT2G13542			unknown protein		Potri.013G008750 [exp]	27.34	0.9669
AT1G01460		ATPIPK11	Phosphatidylinositol-4-phospha...		Potri.014G093300 [exp]	28.21	0.9470
					Potri.002G188650 [exp]	28.40	0.8526
					Potri.005G243501 [exp]	36.49	0.9180
AT1G17030			unknown protein		Potri.001G382000 [exp]	36.57	0.9180
AT4G33230			Plant invertase/pectin methyle...		Potri.003G021300 [exp]	39.06	0.9264
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	40.98	0.9961
					Potri.003G026712 [exp]	49.96	0.9107
					Potri.012G055401 [exp]	50.84	0.8995
AT3G21490			Heavy metal transport/detoxifi...		Potri.010G015300 [exp]	53.58	0.8606

Compare expression of checked genes

Potri.012G107800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.