Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29400 288 / 3e-88 AML5 MEI2-like protein 5 (.1.2) AT2G42890 262 / 2e-78 AML2, MEI2 MEI2-like 2 (.1.2.3) AT5G61960 254 / 4e-75 AML1 MEI2-like protein 1 (.1.2) AT5G07290 231 / 8e-67 AML4 MEI2-like 4 (.1) AT4G18120 179 / 7e-49 AML3 MEI2-like 3 (.1.2) AT3G26120 119 / 1e-28 TEL1 terminal EAR1-like 1 (.1) AT1G67770 107 / 1e-24 TEL2 terminal EAR1-like 2 (.1) AT5G54900 66 / 3e-11 ATRBP45A RNA-binding protein 45A (.1) AT2G43410 63 / 4e-10 FPA RNA binding (.1.2.3.4) AT5G07930 59 / 1e-09 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G107100 [exp] 718 / 0 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.015G106000 [exp] 595 / 0 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.003G162700 [exp] 357 / 7e-113 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.001G067300 [exp] 342 / 3e-107 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.002G059800 [exp] 274 / 8e-83 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.005G202000 [exp] 272 / 6e-82 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.008G183000 [exp] 117 / 7e-28 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.010G051100 [exp] 114 / 8e-27 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.011G138400 [exp] 65 / 6e-11 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043204 [exp] 371 / 2e-118 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10032537 [exp] 370 / 8e-118 AT5G61960 664 / 0.0 MEI2-like protein 1 (.1.2) Lus10011968 [exp] 291 / 2e-89 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2) Lus10004591 [exp] 291 / 3e-89 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10007346 [exp] 289 / 3e-88 AT1G29400 779 / 0.0 MEI2-like protein 5 (.1.2) Lus10020769 [exp] 288 / 5e-88 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10006234 [exp] 112 / 6e-26 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10036953 [exp] 102 / 7e-23 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10002046 [exp] 82 / 3e-16 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1) Lus10002047 [exp] 70 / 2e-13 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] RRM PF04059 [poplar] [flax] RRM_2 RNA recognition motif 2
Representative CDS sequence Show only first row Show all	>Potri.012G107900.2 pacid=42782961 polypeptide=Potri.012G107900.2.p locus=Potri.012G107900 ID=Potri.012G107900.2.v4.1 annot-version=v4.1 ATGCCGTTTGAAGTTATGGATCATAGGGGTAGTACTACGGCATCTTCTCACTATTTCGAGGACATTCATTTGCCTGCTGAGAGACAAATTGGGTTTTGGA ATCCGAATACAATGCCTGATCACCAAGGCGGGCCACTACCAATGCATTATGCAGAGTTATCACAGTCAATCCTAGACAGAGATAAAAAAGAGAAGTCACT CATTAGTGAACAAGGAGCTAATATGTGCGAGCATGCATGGAGTTCTATGGATCATCATCCAAAATCCTGGTCAAGTTTGTCATTGCAACCTGCATCTTAT AGCAAGGGGAGAAGTAGGGCTGATATCAGTGCGGCCCAGTGGGAAAACAGTCTCTTCTCAAGCTCATTTTCTGAAATATTCAGCAGAAAGTTGAGGTTTT CAGGAAATGACATTCATTCTCATCAACCTGCTAAAACCATTACTTCCTCCAACGGGGAAGAAGAGCCCTTTGAATCTCTTGAAGAACTTGAGGCGAAAAC TATTGGAAATCTCCTCCCTCCTGAAGATAACATGTTTTCTGGAGTGACTACTGAGTTGGGGCATGATGCTCAGAACAATAACTTGGATGATCTAGAAGAT TTTGACCTGTTCAGCAGTGGCGGAGGCATGGAATTAGAAGGGGAAGGGGGCCAAGGAAATTCAGGTCTCCTTGGGGGAGTTCCCAATGGTCAAGGGGACT CTAATGGTTCAACTGTTGTTGGACATCCCTCTAGAACGCTTTTTGTCAGAAACATCAATAGCAATGTTGAAGATTCTGAATTGAAGGCTATTTTTGAGCA ATTTGGAGATATCCGAACTCTTTATACAGCGTGCAAGCACCGTGGCTTTGTAATGGTTTCTTATTATGATATAAGAGCAGCTCGAAATGCAATGAATGCG CTTCAAAATAAACCATTGAGGTGTAGGAAACTTGACATTCACTATTCAATTCCAAAAGACAATCCATCAGAGAAAGATATGAACCAGGGCACTATAGTGG TCTTCAACCTTGATTCCTCTATTTCAATTGATGAGCTTCACCAAATATTTGGTGTTTATGGGGAAATTAAAGAGATCCGTGAATCCCCACAAAGGCATAA TGATAAATTCATAGAGTATTATGACATTAGGGATGCAGATGCCGCCCTTTCTGCACTAAATAGGAGTGACATTGCTGGCAAGCAGATCAAGGTTGAATCA AGTCTCCCAGGGGGCACTAGAAGCTTGATGCAACAGTCTGAGCATAAGCAAACTGAACCACATCCATATACTTCAAAGATGCTTCTGGCTGCAATTGATG ATCAATGCCGAGGAACCTATGATTTTATTTACTTACCAATTGACTTCAAGAACAAATGCAATGTGGGCTATGCATTCATCAACATGATTGATCCTCAACA GATCATTCCATTCCATAAGGCGTTCAATGGCAAAAAGTGGGAGAAGTTCAATAGTGAAAAAGTAGCATCTCTTGTATGCTCGGATTCAGGGAAAAGCTGC TCTTATTGCGCATTTCCAGAATTCAAGCTTGATGAATGA
AA sequence Show only first row Show all	>Potri.012G107900.2 pacid=42782961 polypeptide=Potri.012G107900.2.p locus=Potri.012G107900 ID=Potri.012G107900.2.v4.1 annot-version=v4.1 MPFEVMDHRGSTTASSHYFEDIHLPAERQIGFWNPNTMPDHQGGPLPMHYAELSQSILDRDKKEKSLISEQGANMCEHAWSSMDHHPKSWSSLSLQPASY SKGRSRADISAAQWENSLFSSSFSEIFSRKLRFSGNDIHSHQPAKTITSSNGEEEPFESLEELEAKTIGNLLPPEDNMFSGVTTELGHDAQNNNLDDLED FDLFSSGGGMELEGEGGQGNSGLLGGVPNGQGDSNGSTVVGHPSRTLFVRNINSNVEDSELKAIFEQFGDIRTLYTACKHRGFVMVSYYDIRAARNAMNA LQNKPLRCRKLDIHYSIPKDNPSEKDMNQGTIVVFNLDSSISIDELHQIFGVYGEIKEIRESPQRHNDKFIEYYDIRDADAALSALNRSDIAGKQIKVES SLPGGTRSLMQQSEHKQTEPHPYTSKMLLAAIDDQCRGTYDFIYLPIDFKNKCNVGYAFINMIDPQQIIPFHKAFNGKKWEKFNSEKVASLVCSDSGKSC SYCAFPEFKLDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.012G107900 [exp]	0	1
AT3G14172			unknown protein		Potri.003G070400 [exp]	3.16	0.9064
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.016G097800 [exp]	7.74	0.8988	ALPHA.3
AT1G27170			transmembrane receptors;ATP bi...		Potri.012G053200 [exp]	8.71	0.8972
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	8.77	0.9096
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060300 [exp]	10.24	0.8901
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.019G068400 [exp]	10.48	0.8836
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	12.24	0.8898
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060126 [exp]	13.41	0.8827
AT1G61850			phospholipases;galactolipases ...		Potri.004G018700 [exp]	17.94	0.8810
AT2G37195			unknown protein		Potri.016G090000 [exp]	19.41	0.8685

Compare expression of checked genes

Potri.012G107900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.