Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34400 640 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G08070 428 / 7e-141 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 407 / 6e-133 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 402 / 1e-131 MEF22 mitochondrial editing factor 22 (.1) AT4G14820 399 / 6e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 394 / 2e-128 SLO1 SLOW GROWTH 1 (.1) AT3G08820 393 / 5e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G38010 387 / 4e-127 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G13600 388 / 5e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 387 / 1e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145514 [exp] 811 / 0 AT2G34400 472 / 4e-162 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G145510 [exp] 789 / 0 AT2G34400 462 / 3e-158 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G128900 [exp] 453 / 2e-151 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 453 / 3e-151 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 442 / 1e-147 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 443 / 1e-146 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 443 / 2e-146 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 426 / 4e-141 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G041501 [exp] 409 / 4e-140 AT2G34400 251 / 1e-79 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010320 [exp] 811 / 0 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 433 / 2e-143 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 424 / 2e-139 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 419 / 2e-137 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 410 / 5e-134 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 398 / 1e-130 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030053 [exp] 400 / 3e-130 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 394 / 4e-129 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10009269 [exp] 389 / 1e-126 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033858 [exp] 374 / 1e-121 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.012G108000.1 pacid=42782920 polypeptide=Potri.012G108000.1.p locus=Potri.012G108000 ID=Potri.012G108000.1.v4.1 annot-version=v4.1 ATGCTATGCCTGTTGTGTCCGGAGACAGTAGCAAACGCTGCCTTAGTTATATGTTTTGGAAGTGTAAGCAAAGTCGAGTTCCATAAAACAATGCTCAAGA CAAGACCTACCTCTTTTCTACCCCCCTACCATCTCCCTCTTTCAAACCTCAACTTCCAAACCCAAAAAGAACATCATCAAACCTTAACTGAAAAGCTTTT GTCTCTGATAAAACAATGCAAATCCAAAAACCTATTAAAACAAATCCACGCACAAATGCTTATAAACTCAATACCAAAACCCAATTTCCTTCTTTCCAAA ATCATTGACCTCAAAGACTTGGCCTATGCATCCCTTGTTTTTAATCAACTCACCAAACCCAATATTTATGCCTTCAATGTCATGCTTCGTGGGTTAGCTA CCACATGGAAAAAGTATGATTTTTGTGTTGAATTGTATTACAAGCTGAAGTCTTTAGGCCTAAAAGCAAATAATTTTACATACCCTTTTTTGTTTATAGC TTGTGGGAATGTTCGGGGTTTGGTTCATGGAAAGATTGGTCATTGTCTGGTGTTTAAGGCTGGTTTGGATGGTGATGAGTATGTGAATCATTCTTTGATT ACGATGTACGCAAGGTGTGGTGAAATGGGTTTTGCACGGAAGGTGTTTGATGAAATGGGTGACAGAGACTTGGTGTCGTGGAATTCGATGATTTCAGGGT ATTCTAAGATGGGTTTTACTAAAGAGGCAATTGGGTTGTTTATGGAAATGAGGGAGGAGGGGTTTGAGCCAGATGAGATGACGTTGGTGAGTGTTCTTGG GGCGTGTGGGGATTTGGGGGATTTGGGTTTGGGGAGATGGGTGGAGGGGTTTGTTTTGGAGAAGAAGATGGAGGTAAATTCGTATATGGGGTCTGCTTTG ATTGACATGTATGGTAAGTGTGGGGATTTGATATCTGCGAGGAGAGTCTTTGATTCGATGCCAAACAAGGATGTTGTCACCTGGAATGCCATTATCACAG GGTATGCACAGAATGGAGCTTCCAACGAAGCAATTGTCCTATTCAATGGAATGAGAGAGGCAGGTCCTCATCCAGATAGAGTCACAATGATTGAGGTATT GTCTGCATGTTCCACAATAGGGGCCCTTGATTTGGGGAAATGGGTTGAGACACATGCATCAGAAAAAGGTTTACAGCACGATGTCTATGTTGCGAGTGCA TTAATTGATATGTATGCAAAATGTGGGAGCTTGGATGATGCAGTCAGGGTTTTTGAGAGCATGCCCCATAAAAATGAGGTTTCATGGAATGCCATGATTT CAGCTCTTGCTTTCCATGGGCAGGCCCAGGAAGCTTTGTCATTATTCAGGCGCATGTCAAAGGATAATGGCACTGTTCAGCCTAATGACATCACTTTTAT AGGAGTACTCTCTGCATGTGTGCATGCCGGGTTAGTTGATGAGGGCCGCCAATTGTTTGAATCAATGAATTTGTCATTTGGATTGGTCCCAAAAGTCGAG CATTATTCTTGCATGGTTGATCTTTGTGCGCGTGCAGGACTTCTGTACGAAGCTTGGGACTTAATCAAGAAGATGCCTGGAAAACCAGATGAAATTGTGT TGGGGTCATTGCTTGGTGCCTGTCAGAGGCGTAGAAATGCAGATGTTGGTGAAAGGGTCATTCAATTGTTTCTAGAGATGGAGCTATCAAATTCAGGAAA CTATGTTATCTCATCTAAGATATATGCAAATATGAGAAGGTGGGATGATTCTGCAAAGATGAGGGTGTTGATGAGGCAGTGTGGTGTCTCTAAAACCCCT GGCTGTAGCTGGATTGACATTGGAGCTCATGTTCATGAATTTCATGCTGGTGACAGCTTACATCATCATTCGGTGAACATATACCAACTGCTGAATGAGG AGATGAAGAGAGAAGGTTACATTCCAAATATTGGTTGCATATAA
AA sequence Show only first row Show all	>Potri.012G108000.1 pacid=42782920 polypeptide=Potri.012G108000.1.p locus=Potri.012G108000 ID=Potri.012G108000.1.v4.1 annot-version=v4.1 MLCLLCPETVANAALVICFGSVSKVEFHKTMLKTRPTSFLPPYHLPLSNLNFQTQKEHHQTLTEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSK IIDLKDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLI TMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSAL IDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASA LIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVE HYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTP GCSWIDIGAHVHEFHAGDSLHHHSVNIYQLLNEEMKREGYIPNIGCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.012G108000 [exp]	0	1
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Potri.015G035300 [exp]	4.79	0.8483
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.008G048900 [exp]	14.73	0.7789
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	16.37	0.8398
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Potri.014G016100 [exp]	21.90	0.7948
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Potri.010G189700 [exp]	22.51	0.8233
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G044700 [exp]	22.89	0.8133
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.001G074400 [exp]	22.91	0.8052	ENOD8.2
AT1G73970			unknown protein		Potri.008G016000 [exp]	25.92	0.7952
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.012G014200 [exp]	26.83	0.7996
AT1G04970			lipid-binding serum glycoprote...		Potri.001G358800 [exp]	30.29	0.8024

Compare expression of checked genes

Potri.012G108000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.