Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50970 598 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G19920 414 / 3e-137 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 49 / 7e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 49 / 8e-06 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 47 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G58230 43 / 0.0006 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 43 / 0.0006 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106300 [exp] 947 / 0 AT5G50970 566 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G002300 [exp] 47 / 4e-05 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 47 / 5e-05 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 46 / 6e-05 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G030000 [exp] 46 / 0.0001 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.014G179700 [exp] 45 / 0.0001 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G216200 [exp] 45 / 0.0002 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G200500 [exp] 45 / 0.0002 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032536 [exp] 665 / 0 AT5G50970 601 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10043205 [exp] 662 / 0 AT5G50970 603 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10011224 [exp] 49 / 1e-05 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 49 / 1e-05 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10018458 [exp] 49 / 1e-05 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 49 / 2e-05 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10040464 [exp] 47 / 2e-05 AT4G34460 568 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10023579 [exp] 45 / 0.0002 AT4G34460 590 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10042325 [exp] 43 / 0.0006 AT4G34460 598 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10033460 [exp] 42 / 0.001 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G108100.1 pacid=42782999 polypeptide=Potri.012G108100.1.p locus=Potri.012G108100 ID=Potri.012G108100.1.v4.1 annot-version=v4.1 ATGAGCACGCCTTCTCCGATCCTGAAAAGGCCAAAACTAGAGCAGCGAAACAACGACGACGATAATGAAGCGTCGCTAAATCAAAAATCGAACGAGAACA ACGGCAGAGAAGAAGAAGAAGATAGCATAGAAGAGCAAAAGGTCGCTTTCATTGCTTTAATCGAACACCGCTCTCATGAAGTCCAACATCTTAAGCAACG CCTTTCTTATTATAAAACTCAGCTTGTTGAAGCGGAGAAGAGGTTAGAGGATTCTCAGACGAAATTGGCTCGGTTAAGTGGAAGAAGCAATGCATCAGTG GCGAATAAACCTTCTGTGGAGAACGGTATCAAGAAAGTGAAGATGGAGAGGAAGTCGCCAAGTCCGGTTCGTTTGAATGAAGCTTCTTCTAGCAGTCAGC CTCAATCTAGAACTGAACTTGTGATTCCTGCTGTGAATCCGAAAGTTCCCCAAACAGTAAAATCGGTGGGCTCTGGTGCGAGGATTTCATGTGGTTCTAG TGCTCATCTGAGTTCTCTTGCTCCTTCTAATGGTGTTGTAAATGTGAAAGTAGAAAAACCTTATAGTGCTGCGAATGTGAAAGTGGAAAAATCCAATAGT GCAGTGAAAGTGAAGATGGAAAAGTGTCACAGAAGTTCTTCTGATGTTGAAGTTGTTGAAATTCAGGATCGAGGAAATAAAAGGAAGATTGAACAGAAAG AACACAAGGAATTGATTCCGCTGGTGTCTAGGAGCTCTGCTCCATGCACAGTCCACTGCCATACAAGTAATCATATCTCTAGTCAGCACAAAAGAAAGTT GAGAAGTGTTGCTGTATGTCCGGTGAATGATCAGCTTTTTGTATCCAGTGCTTTAGATGGAATGATCAACCTATGGCAACTACAAGCTAGAGGGTCAGGT GCCTCTCTGCTTAGCACCACTGATAGTGTGTCTCCAGTGCAACGGCGATGGCCAGAAGATATAGCTTGGCACCCTCTGGGAAATAGCTTATTTTCTGCTT ACACTGCAGATAGTGGGGATGCTCAGATATCAGTTCTGAATTTGAATAAAACACAAGGGAGAGCACGGGTAACTTTCTTGGAGGACAAACCTCATATTAA GGGTATTATTAACGGCATAGAGTTCATGCCTTGGGAAAATACCTGTTTTGTCACTGGTGGCAGTGATCATGGTGTTGTTCTTTGGAATGAGAAAGATGAA GAGAACTCATGGAAGCCAAAGGCATTGCACAGGAATATGCATTCTTCTGCAGTCATGGGGGTTGCTGGGATGCAGCAAAAGCAGATTGTACTGTCTGCTG GTGCAGACAAGAGAATTGTTGGGTTTGATGTGCAAGTTGGGAGAGCAGACTTTAAACATCAACTCGACAGCAGATGCATGAGTGTTCTGCCAAATCCATG TGACTTCAATCTATTCATGGTCCAAACAGGGACTCTTGGGAAGCAACTTAGGTTGTTCGATATTAGATTGAGGCAAACGGAAATTCATTCCTTTGGGTTT AAACAAGAAAGTAGTGACTCTCAGTCAGCTCTGATCAATCAAGCTTGGTCTCCTGATGGTTTGTACCTCACATCTGGTTCGGTAGACCCTGTGATCCATG TCTTTGATATCAGGTACAATTACCACAAGCCATCCCAGTCCATAAAAGCTCATCAGAAACGAGTCTTTAAAGCAGTATGGCATTATTCCCTCCCGCTTCT GATTTCCATATCTTCTGATCTGCACATCGGACTGCACAAGATCATATAA
AA sequence Show only first row Show all	>Potri.012G108100.1 pacid=42782999 polypeptide=Potri.012G108100.1.p locus=Potri.012G108100 ID=Potri.012G108100.1.v4.1 annot-version=v4.1 MSTPSPILKRPKLEQRNNDDDNEASLNQKSNENNGREEEEDSIEEQKVAFIALIEHRSHEVQHLKQRLSYYKTQLVEAEKRLEDSQTKLARLSGRSNASV ANKPSVENGIKKVKMERKSPSPVRLNEASSSSQPQSRTELVIPAVNPKVPQTVKSVGSGARISCGSSAHLSSLAPSNGVVNVKVEKPYSAANVKVEKSNS AVKVKMEKCHRSSSDVEVVEIQDRGNKRKIEQKEHKELIPLVSRSSAPCTVHCHTSNHISSQHKRKLRSVAVCPVNDQLFVSSALDGMINLWQLQARGSG ASLLSTTDSVSPVQRRWPEDIAWHPLGNSLFSAYTADSGDAQISVLNLNKTQGRARVTFLEDKPHIKGIINGIEFMPWENTCFVTGGSDHGVVLWNEKDE ENSWKPKALHRNMHSSAVMGVAGMQQKQIVLSAGADKRIVGFDVQVGRADFKHQLDSRCMSVLPNPCDFNLFMVQTGTLGKQLRLFDIRLRQTEIHSFGF KQESSDSQSALINQAWSPDGLYLTSGSVDPVIHVFDIRYNYHKPSQSIKAHQKRVFKAVWHYSLPLLISISSDLHIGLHKII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50970			transducin family protein / WD...		Potri.012G108100 [exp]	0	1
AT1G17520	MYB		Homeodomain-like/winged-helix ...		Potri.006G147400 [exp]	7.34	0.7559
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.003G040900 [exp]	8.12	0.7772
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Potri.004G155300 [exp]	8.83	0.6556	GRP1.2
AT1G64050			unknown protein		Potri.001G098500 [exp]	8.94	0.7765
AT2G40700			P-loop containing nucleoside t...		Potri.019G059100 [exp]	14.49	0.7138
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.001G268200 [exp]	16.58	0.7015
AT1G04790			RING/U-box superfamily protein...		Potri.003G176500 [exp]	17.49	0.7261
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.006G264000 [exp]	18.76	0.7126
AT2G17975			zinc finger (Ran-binding) fami...		Potri.005G115100 [exp]	20.97	0.7073
AT5G61450			P-loop containing nucleoside t...		Potri.003G108000 [exp]	21.16	0.7174

Compare expression of checked genes

Potri.012G108100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.