Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-BON1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61910 827 / 0 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT5G07300 826 / 0 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61900 825 / 0 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT1G08860 686 / 0 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G67800 102 / 4e-23 Copine (Calcium-dependent phospholipid-binding protein) family AT5G14420 98 / 2e-21 RGLG2 RING domain ligase2 (.1.2.3.4) AT3G01650 95 / 2e-20 RGLG1 RING domain ligase1 (.1) AT1G79380 86 / 1e-17 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G63970 85 / 2e-17 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT5G04220 44 / 0.0002 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106400 [exp] 1019 / 0 AT5G61910 796 / 0.0 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.013G029100 [exp] 718 / 0 AT1G08860 857 / 0.0 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Potri.003G055501 [exp] 137 / 4e-38 AT5G07300 95 / 3e-23 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) Potri.016G003000 [exp] 102 / 3e-23 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.006G002600 [exp] 98 / 1e-21 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G183600 [exp] 97 / 4e-21 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 96 / 9e-21 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.001G342200 [exp] 94 / 3e-20 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G081300 [exp] 92 / 6e-20 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043206 [exp] 744 / 0 AT5G61900 684 / 0.0 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) Lus10033826 [exp] 716 / 0 AT1G08860 880 / 0.0 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Lus10032533 [exp] 407 / 3e-138 AT5G61910 387 / 6e-131 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Lus10018973 [exp] 340 / 4e-112 AT1G08860 403 / 4e-137 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Lus10014587 [exp] 103 / 1e-23 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 100 / 4e-22 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10022294 [exp] 97 / 3e-21 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10036879 [exp] 94 / 6e-20 AT3G01650 555 / 0.0 RING domain ligase1 (.1) Lus10006231 [exp] 92 / 6e-20 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10011405 [exp] 92 / 9e-20 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0128 [poplar] [flax] vWA-like PF07002 [poplar] [flax] Copine Copine
Representative CDS sequence Show only first row Show all	>Potri.012G108200.1 pacid=42782608 polypeptide=Potri.012G108200.1.p locus=Potri.012G108200 ID=Potri.012G108200.1.v4.1 annot-version=v4.1 ATGGGGAATTGCTTCTCTGACGTTGCCGGCGGTAGGGCGGCAGTTGGCGGCAGCGCCGCTGCCGCTTCTGCCGCAGCTGGAAACGACGCTGTAGATCATT TTCTTAAGTCTCGTGGCTTGTACGGCTCTCAGATCGAGTTATCGTTTTCTGCTACCAACATGCGTGACCGGGATGTGCTTTCAAAGAGTGACCCTATGTT GGTTGGTTATACCAAAGGAAGAGATGGAACACTTACTGAAGCTTTTCGCACAGAAGTAGTTCTTAATTCATTAAATCCAACATGGATTGCAAAACACACT ATTACATTCCAGTTTGAAGTTGTTCAGACGTTGGTGTTTCACGCATATGACGTTGACACTCAATTTCACAACATAGATGTAAAGATGCTTAAGCTAGAGG AGCAACAATTTCTTGGTGAAGCATCTTGTGTATTATCTGAGGTTGTGACCAGGCCAAGCAGGTCATTGACTTTAGATCTTGTATACAGAGAAGATCCTAC GATACCAGGCAATCCACGGCGCTGTGGACAGCTTATTGTACATGCCGAGGAATGCATTAGCTCAAAGACGACAACAGAGATGATATTAAAGTGCTCAAAT TTGGAACAAAAGGATCTGTTCTCAAGAAGTGACCCTTTTTTGTTAATATCAAAAATTGTTGAGGCTGGGCTCCCCATACCTGTGTGTAAAACAGAAGTCC TAAAAAACGATAACCACCCAATATGGAAACCAGTCTTTTTGAGCATTCAACAAGTTGGAAGCAAGGAAAATCCATTAATGATCGAGTGCTTTAACTTCAA TAGCAGTGGCAAGCATGATTTAATTGGAAAAGTTCAAAAATCATTAGCTGAGTTGGAAAAGCTTCATTCTAGTGGTGAAGGAGAGCATTTATTTTTACCC ACTACTGTTGGGCATAACTATCAGAATAAGGTATTAAAGAGCCAGATATTTGTAGAAAATTTTTCCCAAAGTAGTCGACACACTTTTCTGGATTACTTGA CCGGGGGATGTGAACTGAACTTCATGGTGGCAATTGATTTCACGGCTTCTAATGGAAATCCCCGCCTCCCTGATTCCTTGCATTATCTTGATCCTTCTGG ACGGCTAAATGCATACCAAAGAGCAATCATAGAGGTCGGGGAGGTGTTGCAGTTTTATGATTCAGATAAGCGCTTTCCAGCCTGGGGATTTGGAGCACGA CCAATTGATGGTCCAGTATCGCATTGTTTTAACTTGAACGGAAGCAATAATCACTGTGAGGTTGATGGTGTCCAGGGAATTATGATAGCATATACCAGTG CTCTCTATAATGTTTCTCTGGCAGGGCCAACACTTTTTGGACCTGTGATCAGCAATGCTGCACTAATTGCTAGCCAGTCTCTTGCAAATGGAGGAAGAAA ATATTTTGTTTTGTTAATAATTACAGATGGAGTTGTAACTGATCTCCAAGAAACCAAAGATGCCATAGTGAAAGCATCTGACCTACCTCTATCAATCCTC ATTGTTGGAGTTGGAGGAGCTGACTTTAAAGAAATGGAGATTTTAGATGCTGATAAAGGAGATAGACTAGAAAGTTCAACTGGACGTGTAGCTTCGCGTG ATATAGTCCAGTTTATACCATTACGAGATGTACAAAGTGGAGAGATTTCTGTTGTTCAAGAACTTCTGGCAGAACTACCAACCCAATTTTTATCCTACAT GCGATCGAGAAATATCCAACCAGACATTTGA
AA sequence Show only first row Show all	>Potri.012G108200.1 pacid=42782608 polypeptide=Potri.012G108200.1.p locus=Potri.012G108200 ID=Potri.012G108200.1.v4.1 annot-version=v4.1 MGNCFSDVAGGRAAVGGSAAAASAAAGNDAVDHFLKSRGLYGSQIELSFSATNMRDRDVLSKSDPMLVGYTKGRDGTLTEAFRTEVVLNSLNPTWIAKHT ITFQFEVVQTLVFHAYDVDTQFHNIDVKMLKLEEQQFLGEASCVLSEVVTRPSRSLTLDLVYREDPTIPGNPRRCGQLIVHAEECISSKTTTEMILKCSN LEQKDLFSRSDPFLLISKIVEAGLPIPVCKTEVLKNDNHPIWKPVFLSIQQVGSKENPLMIECFNFNSSGKHDLIGKVQKSLAELEKLHSSGEGEHLFLP TTVGHNYQNKVLKSQIFVENFSQSSRHTFLDYLTGGCELNFMVAIDFTASNGNPRLPDSLHYLDPSGRLNAYQRAIIEVGEVLQFYDSDKRFPAWGFGAR PIDGPVSHCFNLNGSNNHCEVDGVQGIMIAYTSALYNVSLAGPTLFGPVISNAALIASQSLANGGRKYFVLLIITDGVVTDLQETKDAIVKASDLPLSIL IVGVGGADFKEMEILDADKGDRLESSTGRVASRDIVQFIPLRDVQSGEISVVQELLAELPTQFLSYMRSRNIQPDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61910			DCD (Development and Cell Deat...		Potri.012G108200 [exp]	0	1	Pt-BON1.3
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014326 [exp]	2.64	0.7710
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Potri.001G455400 [exp]	2.82	0.7197	Pt-ARRO.2,2OGox14
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Potri.010G132200 [exp]	4.12	0.6749
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.006G219500 [exp]	5.09	0.6889	Pt-GPA1.2
AT1G76460			RNA-binding (RRM/RBD/RNP motif...		Potri.002G004600 [exp]	5.29	0.7213
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.012G089700 [exp]	5.74	0.7088
AT5G36930			Disease resistance protein (TI...		Potri.007G099700 [exp]	6.48	0.7488
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Potri.010G215000 [exp]	10.09	0.7398
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014348 [exp]	10.39	0.7167
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014308 [exp]	11.61	0.7277

Compare expression of checked genes

Potri.012G108200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.