Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56860 45 / 7e-06 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT2G41060 45 / 8e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G025600 [exp] 96 / 2e-23 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5) Potri.016G023800 [exp] 82 / 2e-18 AT3G56860 348 / 1e-115 UBP1-associated protein 2A (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032516 [exp] 56 / 2e-09 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10043016 [exp] 55 / 3e-09 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G109100.2 pacid=42783150 polypeptide=Potri.012G109100.2.p locus=Potri.012G109100 ID=Potri.012G109100.2.v4.1 annot-version=v4.1 ATGTTGCTAGAAAGGGCATTTACCTTCGGATTATTGAAAAATAATATATTGAGATTGGGTCTTTTGGGTCTGGTTACCTGGGTCTGCTCTACTCTTCAAA ATCCATGGCTAAAAAACAAAAGCTCAACTCCATATCCACCCAAACAGCAGAAAGAACTGCCGAAGAAACAACAACAACAAAAAGAGCCACAAAAGGAAGA ACCTCAACAACAAGAAGAGGAAGAGGAAGAGGAAGAAGAATATGAAGAAGTGGAAGAGGAGGAAGAAGATAATGAAGATGATCCAGATGAAGAAACCAAT CAAAATGCTCAGATCTCAGCTGTTGAGAATCTAAACGACGACGATGACGAAGATGAGGAACCGACTGAGAAACTTCTTAAACCGTTTGGAAAAGACCAGT TGATTAATTTACTTCGTGAAGCAGCGGATGGTCACCGAGATTTTGCAGATAAAATCCAACAAGTGGCTGACCTTAAAAGAAGGACCATTAGGGCATGA
AA sequence Show only first row Show all	>Potri.012G109100.2 pacid=42783150 polypeptide=Potri.012G109100.2.p locus=Potri.012G109100 ID=Potri.012G109100.2.v4.1 annot-version=v4.1 MLLERAFTFGLLKNNILRLGLLGLVTWVCSTLQNPWLKNKSSTPYPPKQQKELPKKQQQQKEPQKEEPQQQEEEEEEEEEYEEVEEEEEDNEDDPDEETN QNAQISAVENLNDDDDEDEEPTEKLLKPFGKDQLINLLREAADGHRDFADKIQQVADLKRRTIRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.012G109100 [exp]	0	1
AT1G24267			Protein of unknown function (D...		Potri.003G169200 [exp]	5.65	0.7078
AT3G12050			Aha1 domain-containing protein...		Potri.016G060100 [exp]	11.04	0.7878
AT1G78530			Protein kinase superfamily pro...		Potri.011G101900 [exp]	18.43	0.7833
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	25.21	0.7037
AT4G35870			early-responsive to dehydratio...		Potri.005G108600 [exp]	26.72	0.7094
AT5G02920			F-box/RNI-like superfamily pro...		Potri.017G146500 [exp]	29.13	0.7667
AT5G12410			THUMP domain-containing protei...		Potri.001G254600 [exp]	30.46	0.7565
AT3G51980			ARM repeat superfamily protein...		Potri.003G158701 [exp]	34.89	0.6865
AT2G33730			P-loop containing nucleoside t...		Potri.015G037200 [exp]	37.94	0.6864
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.005G241100 [exp]	62.35	0.6689

Compare expression of checked genes

Potri.012G109100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.