Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61840 750 / 0 GUT1, IRX10-L Exostosin family protein (.1) AT1G27440 712 / 0 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT5G22940 296 / 2e-96 F8H FRA8 homolog (.1) AT2G28110 284 / 6e-92 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT5G03795 127 / 5e-32 Exostosin family protein (.1) AT4G38040 120 / 3e-30 Exostosin family protein (.1) AT5G37000 118 / 1e-28 Exostosin family protein (.1) AT5G11130 117 / 1e-28 Exostosin family protein (.1) AT4G16745 117 / 2e-28 Exostosin family protein (.1.2) AT4G32790 115 / 1e-27 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109200 [exp] 836 / 0 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.001G068100 [exp] 723 / 0 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.003G162000 [exp] 677 / 0 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.015G116700 [exp] 649 / 0 AT5G61840 619 / 0.0 Exostosin family protein (.1) Potri.015G107200 [exp] 310 / 2e-105 AT5G61840 327 / 3e-112 Exostosin family protein (.1) Potri.009G006500 [exp] 302 / 1e-98 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.018G025200 [exp] 135 / 5e-35 AT5G11130 530 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 129 / 5e-33 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 128 / 2e-32 AT5G20260 548 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032530 [exp] 757 / 0 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10043209 [exp] 756 / 0 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10019479 [exp] 696 / 0 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10043326 [exp] 695 / 0 AT1G27440 735 / 0.0 Exostosin family protein (.1) Lus10041343 [exp] 278 / 2e-89 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10037376 [exp] 233 / 2e-72 AT2G28110 501 / 5e-177 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10013790 [exp] 119 / 6e-29 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 118 / 1e-28 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 117 / 1e-28 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10012723 [exp] 115 / 2e-28 AT4G38040 674 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.012G109600.2 pacid=42782752 polypeptide=Potri.012G109600.2.p locus=Potri.012G109600 ID=Potri.012G109600.2.v4.1 annot-version=v4.1 ATGGAGATTTGGAAATGGGTTTTTGTTGGGGTTCTTTGGTATGCTGGTTTTGTATTGAGTACTGGTGCTGTGGAGCTGGGCAGGAGTCAACACACTGAGA GGATTTCAGGAAGTGCTGGTGATGTTTTGGAAGATGATCCTGTTGGAAGGCTGAAAGTTTTTGTCTATGAACTTCCAAGAAAATACAATAAAAAGATTCT ACAAAAGGACCCAAGATGCCTCACCCACATGTTCGCAGCTGAGATCTTTATGCATCGGTTTCTATTATCTAGCCCTGTTAGAACCCTAAACCCCGATGAA GCTGATTGGTTTTATACTCCTGTATATACAACCTGTGATTTGACAACAAATGGCCTTCCTTTGCCTTTCAAATCACCGCGAATGATGAGAAGTGCTATAC AGCTTATTTCTTCAAACTGGCCCTATTGGAATCGGACGGAAGGTGCTGACCACTTTTTTGTAGTGCCACACGACTTTGGAGCATGCTTCCATTATCAAGA AGAGAAGGCTATTGAAAGAGGAATTCTTCCCTTGCTCCAACGTGCCACCTTGGTGCAAACTTTTGGACAAAGAAATCATGTTTGCTTAAAAGATGGTTCC ATTACTGTTCCTCCATATGCTCCTCCACAGAAAATGCAAACCCACCTGATTCCTGAGAAAACTCCTAGGTCAATTTTTGTGTACTTCAGAGGATTGTTTT ATGATGTAGGAAATGACCCAGAAGGTGGCTATTATGCAAGAGGTGCTAGAGCAGCGGTCTGGGAGAACTTCAAGGACAATCCGCTTTTTGACATTTCCAC AGAGCACCCAGCAACATATTACGAAGATATGCAGCGGGCTGTTTTCTGTTTGTGTCCCCTTGGCTGGGCCCCATGGAGTCCAAGATTGGTTGAAGCAGTG ATATTTGGCTGTATCCCTGTTATTATAGCAGACGACATTGTTTTACCCTTTGCTGATGCAATCCCATGGGAAGAAATTGGGGTGTATGTAGATGAGGAAG ATGTTCCAAATTTGGACACCATACTCACTTCCATTCCACCTGAAGTAATATTGAGGAAGCAGAGATTGCTAGCTAACCCTTCAATGAAGCAGGCTATGCT ATTCCCACAACCTGCTCAACCAGGAGATGCTTTCCATCAAGTATTGAATGGACTTGCACGAAAATTGCCTCATGATAGAAGTGTTTACCTGAGACCAAGT GAGAAGATCTTAAACTGGACTGCAGGTCCAGTTGGTGACCTGAAACCTTGGTAG
AA sequence Show only first row Show all	>Potri.012G109600.2 pacid=42782752 polypeptide=Potri.012G109600.2.p locus=Potri.012G109600 ID=Potri.012G109600.2.v4.1 annot-version=v4.1 MEIWKWVFVGVLWYAGFVLSTGAVELGRSQHTERISGSAGDVLEDDPVGRLKVFVYELPRKYNKKILQKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPDE ADWFYTPVYTTCDLTTNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKDGS ITVPPYAPPQKMQTHLIPEKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDISTEHPATYYEDMQRAVFCLCPLGWAPWSPRLVEAV IFGCIPVIIADDIVLPFADAIPWEEIGVYVDEEDVPNLDTILTSIPPEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHDRSVYLRPS EKILNWTAGPVGDLKPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109600 [exp]	0	1
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.014G147000 [exp]	1.00	0.9510	Pt-RIC2.1
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G048800 [exp]	1.41	0.9483
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.010G236700 [exp]	1.73	0.9344
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.008G181700 [exp]	2.82	0.9211
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	3.46	0.9270
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Potri.008G115600 [exp]	7.21	0.9063	CLE12.2
AT2G35880			TPX2 (targeting protein for Xk...		Potri.016G066600 [exp]	8.06	0.9256
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.018G119500 [exp]	8.83	0.9228
AT1G22840		CYTC-1, ATCYTC-...	CYTOCHROME C-A, CYTOCHROME C-1...		Potri.019G076101 [exp]	9.00	0.8842
AT2G40280			S-adenosyl-L-methionine-depend...		Potri.010G185000 [exp]	9.00	0.9186

Compare expression of checked genes

Potri.012G109600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.