Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55690 112 / 2e-28 MADS MADS-box transcription factor family protein (.1) AT5G58890 95 / 7e-22 MADS AGL82 AGAMOUS-like 82 (.1) AT1G22590 71 / 1e-14 MADS AGL87 AGAMOUS-like 87 (.1.2) AT3G05860 68 / 1e-12 MADS MADS-box transcription factor family protein (.1.2.3) AT3G18650 68 / 2e-12 MADS AGL103 AGAMOUS-like 103 (.1) AT5G26650 62 / 2e-10 MADS AGL36 AGAMOUS-like 36 (.1) AT5G27960 62 / 2e-10 MADS AGL90 AGAMOUS-like 90 (.1) AT1G65300 61 / 4e-10 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT1G31630 61 / 4e-10 MADS AGL86 AGAMOUS-like 86 (.1) AT5G26580 61 / 5e-10 MADS AGL34 AGAMOUS-like-34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255700 [exp] 781 / 0 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 338 / 1e-114 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 165 / 1e-47 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.013G107600 [exp] 73 / 3e-15 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.005G002400 [exp] 67 / 2e-12 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.004G222200 [exp] 62 / 1e-10 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1) Potri.006G201700 [exp] 62 / 2e-10 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.007G113800 [exp] 60 / 3e-10 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.004G131100 [exp] 59 / 4e-10 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014095 [exp] 179 / 3e-52 AT5G55690 87 / 3e-19 MADS-box transcription factor family protein (.1) Lus10007371 [exp] 172 / 1e-50 AT5G55690 100 / 1e-24 MADS-box transcription factor family protein (.1) Lus10019819 [exp] 170 / 9e-49 AT5G55690 83 / 7e-18 MADS-box transcription factor family protein (.1) Lus10020789 [exp] 157 / 2e-44 AT5G58890 91 / 9e-21 AGAMOUS-like 82 (.1) Lus10022316 [exp] 71 / 1e-13 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10022325 [exp] 71 / 1e-13 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10014883 [exp] 70 / 2e-13 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10028653 [exp] 62 / 3e-11 AT1G22590 91 / 2e-23 AGAMOUS-like 87 (.1.2) Lus10000974 [exp] 62 / 3e-11 AT5G26650 93 / 3e-24 AGAMOUS-like 36 (.1) Lus10041548 [exp] 59 / 4e-11 AT3G61120 92 / 6e-25 AGAMOUS-like 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.012G109900.1 pacid=42782866 polypeptide=Potri.012G109900.1.p locus=Potri.012G109900 ID=Potri.012G109900.1.v4.1 annot-version=v4.1 ATGGGTCAAAAAAGAATCAAAATGGAATTGATAAGGAAGGAGAAATCTCGTATGCTTACATTCAGGAAGAGGAAGGCAGGTTTGCTTAAAAAGGCTTCTG AGTTCTCTATTCTTTGCGGTGTTGATGCATGCGTAATAATCTTTGGACCAAAGCAGAAGGATGATCATCAGCCTGTAGCACCTGAGACTTGGCCTCCAAA TTCTGAAGAGGTTAGGTGTATTATCAATAGGTACAAGGGCAGTGATCAACCAAGAAGATGTTATCAGGTCTCTGACTACTTTGTTGATAAAAAGAAACAG ATTGATTCTAAGCTTGCAAGATTGCACAAGCAAATTATCAAAGCTAAGTACCCTGCATGGGATGATCGTCTCAACAGCCTTTATGCAGATCAATTAAGGG TTCTTGTTGGTCATTTGGATGCTAAAATCGATCTTGCTGACAAGAAACTTGGAAGTTTCAACGCAAATCAGTATGTCATGGGTGCACCAGGGGTGCAAGC TGCCTCGCTTAGTCCAAGCATTTCTCACGACATGGAAAGCTACATGAAGAGTAGAGATGACAATTTCCTGCAGCTTATTCACAATTCGAATCCCTTTGAT GCTCAACCACCTATGGTATTCTACCCTGAGCAGAGTTCTCACGTGACCAACTTACTGGAGAGAAATTATAGCAATGGCTACTCAGCAGACTTGCAGGTTT ACTATGAACCAAGGCCTTTAGATGATCAGTTACCAGTCGGTTTCCAATCTAAACAGACTTCTCATGGGACTACAAGGAATGCAAGTTTTTGGGAGAGCAA CAATGGCAACTGCTATTCAACAGACCTGCAACTTTACTTAGAACCAAATCCATTGAATGTTCAACCACCAATGCATTTCCAACCTAAGCAGAATGCTCAT AGGACTTCGTCATATCTACATGCAATGGAAGATGCGATTATGAAGATGGCTTGCGATCAGTATACCAGCGATCAATTTGGTTGTAAGCTGTCTAGTAGTA GTAATCTGCCTTGTGTTAACCGCACACCATGGATGTGGGATAATGTATGGTTCAACAATGCTGATTCCTCAGTGAGCTATATTGCTCCAACCAAGCAGCC AATTATGCCATCTATACAATTTCCCATGTCAAGCTTTCCTCGTGATCAGATGCAGTCTTCTGAAGCAAGTGATTAA
AA sequence Show only first row Show all	>Potri.012G109900.1 pacid=42782866 polypeptide=Potri.012G109900.1.p locus=Potri.012G109900 ID=Potri.012G109900.1.v4.1 annot-version=v4.1 MGQKRIKMELIRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKQKDDHQPVAPETWPPNSEEVRCIINRYKGSDQPRRCYQVSDYFVDKKKQ IDSKLARLHKQIIKAKYPAWDDRLNSLYADQLRVLVGHLDAKIDLADKKLGSFNANQYVMGAPGVQAASLSPSISHDMESYMKSRDDNFLQLIHNSNPFD AQPPMVFYPEQSSHVTNLLERNYSNGYSADLQVYYEPRPLDDQLPVGFQSKQTSHGTTRNASFWESNNGNCYSTDLQLYLEPNPLNVQPPMHFQPKQNAH RTSSYLHAMEDAIMKMACDQYTSDQFGCKLSSSSNLPCVNRTPWMWDNVWFNNADSSVSYIAPTKQPIMPSIQFPMSSFPRDQMQSSEASD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55690	MADS		MADS-box transcription factor ...		Potri.012G109900 [exp]	0	1
AT5G55690	MADS		MADS-box transcription factor ...		Potri.002G255700 [exp]	1.00	0.8539
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074800 [exp]	4.47	0.8018
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Potri.001G055000 [exp]	7.21	0.8289
					Potri.017G124901 [exp]	9.48	0.8019
AT5G66590			CAP (Cysteine-rich secretory p...		Potri.005G130100 [exp]	15.96	0.7607
					Potri.012G031250 [exp]	19.59	0.7919
AT2G29125		RTFL2, DVL13	DEVIL 13, ROTUNDIFOLIA like 2 ...		Potri.009G034300 [exp]	33.25	0.7608
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Potri.016G072000 [exp]	38.78	0.7209
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Potri.006G005700 [exp]	43.81	0.7362
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Potri.006G125600 [exp]	46.64	0.7728	Pt-ROT4.1

Compare expression of checked genes

Potri.012G109900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.