Plant FIBer expression Database

Potri.012G110300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61820 365 / 1e-124 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G108500
[exp]
534 / 0 AT5G61820 470 / 2e-163 unknown protein
Potri.015G108600
[exp]
491 / 4e-174 AT5G61820 477 / 3e-166 unknown protein
Potri.015G108800
[exp]
428 / 3e-149 AT5G61820 468 / 7e-163 unknown protein
Potri.015G108700
[exp]
422 / 5e-147 AT5G61820 453 / 5e-157 unknown protein
Potri.012G110600
[exp]
84 / 6e-19 AT5G61820 153 / 4e-44 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004249
[exp]
376 / 2e-129 AT5G61820 435 / 2e-150 unknown protein
Lus10003210
[exp]
348 / 3e-118 AT5G61820 431 / 1e-148 unknown protein
Lus10017316
[exp]
343 / 3e-116 AT5G61820 436 / 1e-150 unknown protein
Lus10042158
[exp]
329 / 7e-111 AT5G61820 415 / 1e-142 unknown protein
Lus10015933
[exp]
288 / 1e-94 AT5G61820 306 / 7e-100 unknown protein
Lus10033851
[exp]
283 / 2e-92 AT5G61820 316 / 6e-103 unknown protein
Lus10017315
[exp]
151 / 2e-45 AT5G61820 130 / 1e-36 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07712 SURNod19 Stress up-regulated Nod 19
Representative CDS sequence
>Potri.012G110300.2 pacid=42782683 polypeptide=Potri.012G110300.2.p locus=Potri.012G110300 ID=Potri.012G110300.2.v4.1 annot-version=v4.1
ATGGCACATCGTCCTCGAGGAGGCTTGCTTTTGTCAGCAATGCTAGCGCTAACACTTGCATTTAATGTATCTTGCACACTAGCTTCTCCGAGAATTGGAA
ATAAGATCAAATCTGCCACTTTTCTTTCTCCTGAGTTTGTACTCGGACCAGGATCAGTAGAGAATAGGTTTTATTACAATATTGACTTTCCAAGGGGTCA
TATTGGTCTTAAGAGTCTCGGGGCTGAAGTAATTGATGAAGCTGGGAAACCAATACCCCTTCATGAAACTTATCTTCATCACTGGGTTGTTGCAAAGTAC
TATCAGCGTCAGGACGTGGTAGAGAACAATGGTGACCAGAAGTTTCAGCAGGCAGACTATATATTTGGAACAAACAGTGGGATATGCCAAGGGACTGTTC
TGCGACAGTATTTTGGCCTTGGATCCGAAACACGAAAAACGGATACTCACATTCCTGATCCTTATGCAATAGAAATTGGCAATCCAGCTGAAATTCCTGA
AGGATATGAAGAGAAATGGATGCTTAATGTCCATGCAATTGATACACGGGGTGCCGTAGATACGTTGGGATGCACAGAATGTAGATGCGATCTGTACAAC
GTCACGGTGGATGAATATGGTCAACCTTTGAGCCCAGACTACATAGGGGGTCTAAATTGTTGCTATGATCAAACACGTTGCAAGGTACAACAAGGTTATG
GAGGTGCCAGGAGGAGTCTATACTTACGGTACACTGTGGAATGGGTCGATTGGGATTGTGACATTATCCCTGTTAAAATCTTTATATTTGATGTCACTGA
TACTGGAAAAAGGCTTAATGTTTCGACTGGATTGAGTCCAGAGAATGGTTGCCAGGTTGAGTATGATGTTGAGCCTTGCGGCAGCGCCAATGCAGTTTCT
GATGGATGCATTCATGTCCAAAGCACAAGCCTGACCATGCCGATCAGTGGTTATGTCATCTACGGAGTTGCCCATCAGCATAGAACCATAAATATATGA
AA sequence
>Potri.012G110300.2 pacid=42782683 polypeptide=Potri.012G110300.2.p locus=Potri.012G110300 ID=Potri.012G110300.2.v4.1 annot-version=v4.1
MAHRPRGGLLLSAMLALTLAFNVSCTLASPRIGNKIKSATFLSPEFVLGPGSVENRFYYNIDFPRGHIGLKSLGAEVIDEAGKPIPLHETYLHHWVVAKY
YQRQDVVENNGDQKFQQADYIFGTNSGICQGTVLRQYFGLGSETRKTDTHIPDPYAIEIGNPAEIPEGYEEKWMLNVHAIDTRGAVDTLGCTECRCDLYN
VTVDEYGQPLSPDYIGGLNCCYDQTRCKVQQGYGGARRSLYLRYTVEWVDWDCDIIPVKIFIFDVTDTGKRLNVSTGLSPENGCQVEYDVEPCGSANAVS
DGCIHVQSTSLTMPISGYVIYGVAHQHRTINI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61820 unknown protein Potri.012G110300
[exp]
0 1
AT5G10530 Concanavalin A-like lectin pro... Potri.001G262866
[exp]
2.82 0.8574
AT4G27190 NB-ARC domain-containing disea... Potri.001G426200
[exp]
8.00 0.8485
AT1G09230 RNA-binding (RRM/RBD/RNP motif... Potri.019G031700
[exp]
9.16 0.8337
AT5G18610 Protein kinase superfamily pro... Potri.010G021500
[exp]
10.39 0.7655
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.006G242200
[exp]
10.95 0.8049
AT1G31420 FEI1 FEI 1, Leucine-rich repeat pro... Potri.003G105000
[exp]
11.22 0.7813
AT4G21800 QQT2 quatre-quart2, P-loop containi... Potri.008G103000
[exp]
13.78 0.8121
AT5G06100 MYB ATMYB33 myb domain protein 33 (.1.2.3) Potri.003G189700
[exp]
20.78 0.7910
Potri.001G265000
[exp]
22.22 0.7808
AT2G27350 OTLD1 otubain-like deubiquitinase 1,... Potri.004G196800
[exp]
22.24 0.7942

Potri.012G110300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.