Plant FIBer expression Database

Potri.012G110400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78680 477 / 2e-168 ATGGH2 gamma-glutamyl hydrolase 2 (.1.2)
AT1G78660 464 / 2e-163 ATGGH1 gamma-glutamyl hydrolase 1 (.1.2.3)
AT1G78670 443 / 6e-155 ATGGH3 gamma-glutamyl hydrolase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G107600
[exp]
697 / 0 AT1G78680 489 / 5e-174 gamma-glutamyl hydrolase 2 (.1.2)
Potri.001G387100
[exp]
622 / 0 AT1G78680 501 / 2e-178 gamma-glutamyl hydrolase 2 (.1.2)
Potri.003G026800
[exp]
620 / 0 AT1G78680 501 / 8e-179 gamma-glutamyl hydrolase 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028143
[exp]
526 / 0 AT1G78680 477 / 4e-169 gamma-glutamyl hydrolase 2 (.1.2)
Lus10042847
[exp]
525 / 0 AT1G78680 481 / 7e-171 gamma-glutamyl hydrolase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0014 Glutaminase_I PF07722 Peptidase_C26 Peptidase C26
Representative CDS sequence
>Potri.012G110400.2 pacid=42783171 polypeptide=Potri.012G110400.2.p locus=Potri.012G110400 ID=Potri.012G110400.2.v4.1 annot-version=v4.1
ATGCCTTCACACTTCCTCTCTAATTCCCCTTCTACCCCTACCACCAAAACCTCTGACCTCCAAAACGACACCGCCGTTTCCCTCACCTCAACCTCCTCAT
CCTCCTCCTCCTCTACTGCTCCAGACATGTGGTCTTACCTTTGGATCCCTTTCTTAATGTCACTCTCTAAAGAGCTAACCCTAGCTCGAGCAGCAACAGC
TACAACTTCTTCTCCTTCGATTCTCCCCCCGAGTCAACTCGCCGATGATGACTCGCCTTCCGTGCCTAGGTGTTCAGCCCCGGACATCAAGTTGAATTAC
CGGCCGGTGATTGGAATTTTGAGTCATCCAGGCGACGGTGCCTCTGGAAGGTTGAACAACGAGACGAACGCTTCGTATATTGCGGCGTCGTACGTTAAGT
TTGTTGAATCGGCTGGTGCCAGGGTTATTTCCTTGATTTATAACGAGCCACGAGAGATTCTTTTTGAGAAGCTCAATCTGGTAAATGGAGTGCTCTTTAC
AGGAGGTTGGGCTAAAACTGGTTTATACTTTGACACCGTGAAGGCAATTTTCAAGGAAATTTTAGCAAAGAATGATGCAGGCTTCCATTTCCCAGTGTAT
GCCATCTGCTTAGGCTTTGAAATCCTGACAATGATCATTAGTGAGGACAATCAAATTCTGGAAACATTTAATGGAGCAGATCAGGCTTCTACTCTTCAAT
TTATGAATAACATAAATATCAAAGGAACTGTATTTCGGAGATTTCCTCCAGATTTGCTTAAAAGATTGAGTACAGATTGCCTAGTTATGCAAAACCATCA
CTATGGCATCTCACCACAACGGTTTCAGGAGAGTGAACATCTATCTAGTTTCTTGGAGATCTTGACTACTAGTACAGATGAAGATAACCAGGTCTATGTC
TCCACTGTTCAAGCTTGCGGCTATCCTGTGACTGCCTTCCAATGGCATCCTGAGAAAAATGCTTTTGAATGGGGTTTATCAATGATTCCACACTCAGAGG
ATGCCATTCAAGTTACCCAACACATTGCAAACTTCTTTGTCAGTGAGGCTAGGAAGTCCTTGAACAGGCCATCTTCTCGGAAGGTACTCGCCAATTTAAT
CTACAATTACAGCCCCACATATTGCGGGAAAGCTGGGAAGGGATATGATGAGGTTTACATCTTCGCAGAGCAAAAGGCACCAAAGTATACGAGCACAAAC
GCACCAGAGAACGCCTCACAAACAAACCAAAGAACACGTTCACTGTTCCAGATCCACCTCGCAAACACCACCGTGCAACCATTCCATCTCCCTACCCAGA
ACCATCAATGTTTTGTTCTGCTTCTCGGTGGTATTCTAGAGCGATGTGAGGCTGCCTGGTGA
AA sequence
>Potri.012G110400.2 pacid=42783171 polypeptide=Potri.012G110400.2.p locus=Potri.012G110400 ID=Potri.012G110400.2.v4.1 annot-version=v4.1
MPSHFLSNSPSTPTTKTSDLQNDTAVSLTSTSSSSSSSTAPDMWSYLWIPFLMSLSKELTLARAATATTSSPSILPPSQLADDDSPSVPRCSAPDIKLNY
RPVIGILSHPGDGASGRLNNETNASYIAASYVKFVESAGARVISLIYNEPREILFEKLNLVNGVLFTGGWAKTGLYFDTVKAIFKEILAKNDAGFHFPVY
AICLGFEILTMIISEDNQILETFNGADQASTLQFMNNINIKGTVFRRFPPDLLKRLSTDCLVMQNHHYGISPQRFQESEHLSSFLEILTTSTDEDNQVYV
STVQACGYPVTAFQWHPEKNAFEWGLSMIPHSEDAIQVTQHIANFFVSEARKSLNRPSSRKVLANLIYNYSPTYCGKAGKGYDEVYIFAEQKAPKYTSTN
APENASQTNQRTRSLFQIHLANTTVQPFHLPTQNHQCFVLLLGGILERCEAAW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78680 ATGGH2 gamma-glutamyl hydrolase 2 (.1... Potri.012G110400
[exp]
0 1
AT1G78680 ATGGH2 gamma-glutamyl hydrolase 2 (.1... Potri.011G107600
[exp]
1.41 0.8475
AT3G42670 CLSY1, CLSY, CH... CLASSY 1, CLASSY1, chromatin r... Potri.010G183832
[exp]
2.23 0.8491
AT3G10550 MTM1, AtMTM1 Arabidopsis thaliana myotubula... Potri.008G026900
[exp]
8.48 0.8202
AT1G51745 Tudor/PWWP/MBT superfamily pro... Potri.003G045600
[exp]
9.38 0.6866
AT4G32640 Sec23/Sec24 protein transport ... Potri.005G049100
[exp]
11.48 0.7197 CEF.1
AT2G36240 pentatricopeptide (PPR) repeat... Potri.006G068700
[exp]
12.32 0.8093
AT5G15400 U-box domain-containing protei... Potri.004G121200
[exp]
12.48 0.7404
AT5G47400 unknown protein Potri.001G155800
[exp]
16.61 0.7635
AT4G30230 unknown protein Potri.006G168400
[exp]
20.85 0.7328
AT3G54610 ATGCN5, HAG1, H... HISTONE ACETYLTRANSFERASE 1, g... Potri.005G217400
[exp]
22.44 0.6952

Potri.012G110400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.