Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61820 153 / 5e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108500 [exp] 284 / 7e-95 AT5G61820 470 / 2e-163 unknown protein Potri.015G108600 [exp] 253 / 1e-82 AT5G61820 477 / 3e-166 unknown protein Potri.015G108800 [exp] 214 / 2e-67 AT5G61820 468 / 7e-163 unknown protein Potri.015G108700 [exp] 213 / 4e-67 AT5G61820 453 / 5e-157 unknown protein Potri.012G110300 [exp] 84 / 7e-19 AT5G61820 366 / 9e-125 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004249 [exp] 176 / 3e-53 AT5G61820 435 / 2e-150 unknown protein Lus10017316 [exp] 164 / 1e-48 AT5G61820 436 / 1e-150 unknown protein Lus10003210 [exp] 162 / 1e-47 AT5G61820 431 / 1e-148 unknown protein Lus10042158 [exp] 162 / 1e-47 AT5G61820 415 / 1e-142 unknown protein Lus10015933 [exp] 144 / 5e-41 AT5G61820 306 / 7e-100 unknown protein Lus10033851 [exp] 137 / 6e-38 AT5G61820 316 / 6e-103 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07712 [poplar] [flax] SURNod19 Stress up-regulated Nod 19
Representative CDS sequence Show only first row Show all	>Potri.012G110600.2 pacid=42782953 polypeptide=Potri.012G110600.2.p locus=Potri.012G110600 ID=Potri.012G110600.2.v4.1 annot-version=v4.1 ATGTCGGGTTTTTACGCTTTTGGTTCATGCTTATCTGAAAACACAAATCATAAAGTGGTTGTTCTGATATTACAGCACTATGGTTGCCAGGTTGAGTATG ATGTTGAGCCTTGCAGCAGCGCCAATGCAGTTTCTGATGGATGCATTGATGTCCAAAGGACAAGCCTGACCATGCTGATCAGTGGTCATGTCATCTACGG TGTTGCCCATCAGCATACTGGGGGAATTGGTTCAACTCTGTATGGGGAGGAAGGACGTGTTATATGTACTTCAGAACCAATTTTTGGAGAAGGAAAGGAT GCAGGGGATGAGGCAGGTTACGTAGTAGGGATGTCCACCTGTTATCCTGAACCAGGCTCTATCCAGATAACAGCTGGGGAGAATCTAGTTCTTGAATCTT ACTACAGCAGTACTCAAAAGCACACGGGAGTTATGGGGATTTTCTACGTTTTGGTTGCTGAGCGAACACCAAATCCCACGAATTTCTTGCATTCTCCGAT TCATATACATGAAAAGATGAAAGTATCCACATCTGCTTTAGCAATAGTAGCTCTGTTAGGACTGGCAGTAGTTGCTGTTGGCCTCCGTTATCGACTGAAG AAGGGGAGAGAAGAAGGCTATGAACCAATAATGGCATAG
AA sequence Show only first row Show all	>Potri.012G110600.2 pacid=42782953 polypeptide=Potri.012G110600.2.p locus=Potri.012G110600 ID=Potri.012G110600.2.v4.1 annot-version=v4.1 MSGFYAFGSCLSENTNHKVVVLILQHYGCQVEYDVEPCSSANAVSDGCIDVQRTSLTMLISGHVIYGVAHQHTGGIGSTLYGEEGRVICTSEPIFGEGKD AGDEAGYVVGMSTCYPEPGSIQITAGENLVLESYYSSTQKHTGVMGIFYVLVAERTPNPTNFLHSPIHIHEKMKVSTSALAIVALLGLAVVAVGLRYRLK KGREEGYEPIMA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61820			unknown protein		Potri.012G110600 [exp]	0	1
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.004G153600 [exp]	1.00	0.7748
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	7.54	0.7436
AT1G26370		RID1	RNA helicase family protein (....		Potri.008G096800 [exp]	8.00	0.7658
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	9.79	0.7081
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	15.87	0.6864	Pt-APP.2
AT2G32070			Polynucleotidyl transferase, r...		Potri.018G036050 [exp]	20.73	0.7168
AT4G24970			Histidine kinase-, DNA gyrase ...		Potri.015G100900 [exp]	26.60	0.6925
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.001G151100 [exp]	30.00	0.7179
AT5G65290			LMBR1-like membrane protein (....		Potri.005G072100 [exp]	33.19	0.6710
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	34.40	0.7028

Compare expression of checked genes

Potri.012G110600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.