Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51050 714 / 0 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G07320 663 / 0 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT5G61810 612 / 0 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT4G01100 156 / 5e-43 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G53940 128 / 6e-33 Mitochondrial substrate carrier family protein (.1) AT2G37890 120 / 4e-30 Mitochondrial substrate carrier family protein (.1) AT4G32400 120 / 6e-30 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G55640 119 / 1e-29 Mitochondrial substrate carrier family protein (.1) AT4G26180 110 / 9e-27 Mitochondrial substrate carrier family protein (.1) AT1G14560 105 / 4e-25 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108900 [exp] 824 / 0 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 158 / 6e-44 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 158 / 9e-44 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 157 / 2e-43 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 155 / 5e-43 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.008G060900 [exp] 117 / 4e-29 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 117 / 5e-29 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 116 / 8e-29 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 115 / 3e-28 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016736 [exp] 719 / 0 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 718 / 0 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 704 / 0 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 519 / 0 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032523 [exp] 202 / 9e-63 AT5G07320 204 / 3e-64 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 152 / 9e-42 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 150 / 5e-41 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 150 / 1e-40 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 149 / 2e-40 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10021497 [exp] 124 / 2e-31 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein CL0220 [poplar] [flax] EF_hand PF13202 [poplar] [flax] EF-hand_5 EF hand CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.012G110700.1 pacid=42783336 polypeptide=Potri.012G110700.1.p locus=Potri.012G110700 ID=Potri.012G110700.1.v4.1 annot-version=v4.1 ATGGGAAGAAACCCGAATCGGAACCCAAATCAAACCGATTGTTGCAACCCGGTTAAAAAACCAGGCCCAGTATCCATAGATCATGTGCTACTGGCATTGA GAGAAACGAAAGAAGAGAGGGATGTTAGGATTAGAAGTTTATTCAGTTTTTTTGATGCAGCTAATTTGGGTTATTTAGATTGTGCGCAGATTGAAGCCGG CTTGTCGGGGCTCCAAATTCCTGCCGGGTATAAATATGCCAAAGAGTTGTTGGAAGTTTGTGATGCAAATCGTGATGGACGGGTTGATTACCAGGAGTTT AGGAGGTATATGGATGATAAAGAAATGGAGTTGTATAGGATCTTTCAAGCTATTGATGTTGAACATAATGGCTGCATTTTGCCTGAGGAGTTATGGGATG CTCTTGTTAAGGCTGGGATTGAAATTGATGAGGAGGAGCTTGCCCGTTTTGTAGAGCATGTTGATAAGGATAATAATGGAATTATAACTTTCGAAGAATG GAGAGATTTTCTTTTACTCTATCCTCATGAAGCTACTATTGAAAACATCTACCATCACTGGGAAAGGGTATGCCATGTCGATATTGGAGAGCAAGCTGTT ATTCCAGAAGGAATCAGCAAGCATGTTCATAGGAGTAAATATTTTATTGCAGGGGGTATAGCTGGAGCCGCTTCTCGTAGTGCAACTGCTCCTCTTGATC GCCTGAAGGTTGTCCTGCAAGTTCAGACTACCCGTGCTTGTATGGTGCCTGCTATTAACAAGATATGGAAGGAAGAAGGTTTCTTGGGTTTTTTCCGTGG TAATGGGTTAAATGTTTTAAAGGTAGCACCTGAAAGTGCCATCAAGTTTTATGCTTATGAAATGTTAAAGAATGCAATTGGAGAAGTTAAGGGGGGAGAC AAGGTTGATATAGGTCCTGGTGGGAGACTTTTAGCTGGTGGTATGGCAGGTGCAGTTGCACAGACTGCTATCTATCCTTTGGATCTTGTGAAAACTCGTT TACAAACTTATGTTTGTGAAGGTGGAAAAGCGCCACATTTGGGAGCACTGACAAAGGATATATGGATTCAGGAGGGACCTCGAGCATTTTATAAAGGTCT CGTGCCGTCTCTTCTTGGCATTATCCCATATGCTGGCATTGACCTTGCTGCCTATGAGACTTTGAAAGATATGTCGAAGACATATATACTGCATGACAGT GAACCTGGTCCCCTTGTTCAATTGTGCTGCGGAACAATCTCAGGTTCCGTGGGAGCAACATGTGTTTACCCCTTGCAGGTTATTAGAACCAGAATGCAAG CTCAACCTCCTAGCAATGCTGCTCCTTACAAAGGGATTTCCGATGTATTTTGGAGGACATTTCAGAATGAAGGTTATAGTGGGTTTTACAAAGGAATTTT TCCAAATCTTCTGAAGGTTGTGCCAGCAGTAAGCATAACGTATATGGTTTATGAGGCTATGAAAAAGAGCCTAGAGCTTGATTAG
AA sequence Show only first row Show all	>Potri.012G110700.1 pacid=42783336 polypeptide=Potri.012G110700.1.p locus=Potri.012G110700 ID=Potri.012G110700.1.v4.1 annot-version=v4.1 MGRNPNRNPNQTDCCNPVKKPGPVSIDHVLLALRETKEERDVRIRSLFSFFDAANLGYLDCAQIEAGLSGLQIPAGYKYAKELLEVCDANRDGRVDYQEF RRYMDDKEMELYRIFQAIDVEHNGCILPEELWDALVKAGIEIDEEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCHVDIGEQAV IPEGISKHVHRSKYFIAGGIAGAASRSATAPLDRLKVVLQVQTTRACMVPAINKIWKEEGFLGFFRGNGLNVLKVAPESAIKFYAYEMLKNAIGEVKGGD KVDIGPGGRLLAGGMAGAVAQTAIYPLDLVKTRLQTYVCEGGKAPHLGALTKDIWIQEGPRAFYKGLVPSLLGIIPYAGIDLAAYETLKDMSKTYILHDS EPGPLVQLCCGTISGSVGATCVYPLQVIRTRMQAQPPSNAAPYKGISDVFWRTFQNEGYSGFYKGIFPNLLKVVPAVSITYMVYEAMKKSLELD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.012G110700 [exp]	0	1
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Potri.004G094400 [exp]	5.47	0.6359
AT3G12620			Protein phosphatase 2C family ...		Potri.008G046900 [exp]	7.61	0.5577
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.010G182100 [exp]	9.94	0.5942
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.015G042600 [exp]	16.85	0.6825
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.003G014800 [exp]	17.14	0.5727
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.005G213100 [exp]	18.16	0.6123	HMT5,SMTA.2
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.018G133000 [exp]	18.49	0.6448
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Potri.009G037700 [exp]	22.22	0.5446	Pt-TOPP1.1
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.018G123200 [exp]	25.41	0.5792
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Potri.006G147500 [exp]	27.69	0.5856	Pt-NMT1.6

Compare expression of checked genes

Potri.012G110700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.