Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61800 554 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 352 / 3e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 347 / 1e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 345 / 9e-113 MEF21 mitochondrial editing factor 21 (.1) AT4G18840 342 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G29230 340 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 341 / 2e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 332 / 3e-106 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G42920 328 / 5e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G06540 329 / 2e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 390 / 5e-129 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 365 / 2e-119 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 363 / 2e-118 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 357 / 3e-117 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G231200 [exp] 352 / 8e-115 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 348 / 7e-114 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 347 / 1e-113 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 349 / 3e-113 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 348 / 7e-113 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029344 [exp] 364 / 5e-119 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 363 / 3e-118 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 362 / 4e-118 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 353 / 3e-116 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 353 / 1e-113 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 347 / 4e-112 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 343 / 8e-112 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031423 [exp] 342 / 6e-110 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 335 / 2e-106 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 333 / 7e-106 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.012G110800.1 pacid=42782703 polypeptide=Potri.012G110800.1.p locus=Potri.012G110800 ID=Potri.012G110800.1.v4.1 annot-version=v4.1 ATGTTAATCAGCAGCAGCAGCAATCACATAACACCACAAAATTATCACTCAATAATCATCAAATTAATCAAACAATGCAAAACAATCTCACAGCTCCACC AACTCCATGCTTACACCATCACAAACACACCCCTTTCTTTCCACTCCTCTCCTTCCCTTTTAACCAAATTCCTCTACACTCTCACCACCAAAGCCAAATC TAAATCCTCCACTTCTCTACTACACTACGCAAAATCTATATTCAATTCTATACAAAACCCATCTACATTTTGTTACAATACTATCATAAGAGTCCACACT CTCCTCTCTTTCCCTATCCCTGCCCTCCATTTCTTTACTCAAATGCGCCGTCTTTCTGTCCCTCTTGATTCTCATTCTTTCCCTTTTACCCTCAAAGCCT GCGCGCAGCTTGGCGGGGTTTTTTCAGCGCGTTGTCTTCATTGTCAAGTTCTGAAATTTGGGTTCTTGTCGGATTTGTATGTTATGAATTCTCTTATTCA TGGGTATATGGTTTCTGATATGTCAAATGATGCTTACAAGGTATTCGATGAAAGTCCTCAACGAGATGTGGTTTCTTATAATGTGTTGATTGATGGGTTC GTTAAGGCTGGTGATGTTGTGAAAGCTAGGGAGTTGTTTGATTTAATGCCTGTGAGGGATTCTGTTTCTTGGAATACGATTATAGCTGGGTGTGCAAAAG GAGATTATTGTGAGGAGGCTATTGAATTGTTTGATTTTATGATGGATTTAGAGATTAGGCCTGATAATGTTGCATTGGTCTCAACGCTTTCTGCTTGTGC ACAGCTAGGAGAACTTGAAAAGGGAAAGAAAATTCATGATTATATTGAAAGGAATGCGATGAAAGTGGATACCTTTTTGTCAACTGGGTTGGTTGATTTC TATGCAAAATGCGGGTGCGTTGACATTGCTTTAAAGATATTTGACTCGAGTTCAGACAAAAATCTGTTTACTTGGAATGCAATGCTTGTTGGCCTTGCAA TGCATGGGTATGGTGAGTTATTGTTGGAGTACTTCTCGCGAATGATAGAGGCTGGGGTAAAACCAGATGGGATTAGCATTTTAGGAGTTTTGGTAGGGTG CAGTCATAGTGGTCTCGTAGATGAAGCAAGGAAGCTTTTTGATGAGATGGAATCTGTTTATGGAGTCCCTCGAGAGCCAAAGCATTACGGGTGTATGGCT GATTTGCTTGGGCGGGCTGGGTTGATTAAAAAAGTGATGGAAATGATAAAGGATATGCCCAGCGGAGGTGATATGTCTGTGTGGAGTGGTTTGCTGGGAG GATGTCGAATTCACGGGGATGTTGAGATTGCAGAGAAAGCAGCGAAGCACTTGATGGAGTTGAAACCCGATGATGGTGGGGTTTATTCAATTTTGGCTAA TGTTTATGCTAATGCAGAACGATGGGAAGATGTAATGAATATCAGGAGATCATTGAGCAGTAATAGGGTGGTAACGAAGATTGCTGGTTTTAGCTTGATT CAATTGGATGGGGTTGCACATGAGTTTATCGCAGGGGATAGCTTGCATTCTGAAAGTGATAAGATATATTTGGTTTTAAATGGAATAAGAGAACATCAAA GTGAACTGAGCTAG
AA sequence Show only first row Show all	>Potri.012G110800.1 pacid=42782703 polypeptide=Potri.012G110800.1.p locus=Potri.012G110800 ID=Potri.012G110800.1.v4.1 annot-version=v4.1 MLISSSSNHITPQNYHSIIIKLIKQCKTISQLHQLHAYTITNTPLSFHSSPSLLTKFLYTLTTKAKSKSSTSLLHYAKSIFNSIQNPSTFCYNTIIRVHT LLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQLGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVLIDGF VKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTGLVDF YAKCGCVDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLVGCSHSGLVDEARKLFDEMESVYGVPREPKHYGCMA DLLGRAGLIKKVMEMIKDMPSGGDMSVWSGLLGGCRIHGDVEIAEKAAKHLMELKPDDGGVYSILANVYANAERWEDVMNIRRSLSSNRVVTKIAGFSLI QLDGVAHEFIAGDSLHSESDKIYLVLNGIREHQSELS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	0	1
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	1.00	0.9506
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	2.44	0.9080
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	3.46	0.9001
AT3G26540			Tetratricopeptide repeat (TPR)...		Potri.002G075300 [exp]	3.74	0.8983
AT1G74900		OTP43	organelle transcript processin...		Potri.015G070200 [exp]	3.87	0.8845
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.009G113500 [exp]	4.47	0.9108
AT4G20020			unknown protein		Potri.004G218800 [exp]	6.63	0.8914
					Potri.001G247100 [exp]	6.70	0.8540
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Potri.017G084900 [exp]	7.48	0.8959
AT3G16010			Pentatricopeptide repeat (PPR-...		Potri.001G180000 [exp]	7.48	0.8669

Compare expression of checked genes

Potri.012G110800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.