Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07330 130 / 5e-39 unknown protein AT1G63060 74 / 6e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109100 [exp] 272 / 6e-95 AT5G07330 133 / 3e-40 unknown protein Potri.012G110900 [exp] 114 / 6e-33 AT5G07330 81 / 5e-20 unknown protein Potri.003G160700 [exp] 111 / 1e-31 AT1G63060 114 / 4e-33 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018040 [exp] 128 / 5e-38 AT5G07330 117 / 1e-33 unknown protein Lus10042036 [exp] 125 / 5e-37 AT5G07330 118 / 3e-34 unknown protein Lus10002567 [exp] 59 / 8e-12 AT1G63060 89 / 3e-24 unknown protein Lus10001796 [exp] 57 / 3e-11 AT1G63060 87 / 2e-23 unknown protein Lus10000001 [exp] 46 / 3e-07 AT1G63060 71 / 1e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G111000.2 pacid=42784216 polypeptide=Potri.012G111000.2.p locus=Potri.012G111000 ID=Potri.012G111000.2.v4.1 annot-version=v4.1 ATGGCTTTTAGATCAATGGGATATTGGAAATCAATAGCTAGTCGCTTAAGTGGAACAACAACCTATGCAACCTCAACCCCGCCAAAACTGAAATCATATG CACCAACAGCTGATCAGTTTGGACATCACTATCATCAAGAAAGCAAGCATGGCAAGAAGGTGAGAGGTGACTTTGTGCCAGTTTATGTGGCAATAGGGAT GATAGCTGTATCAATATCACTTGGTCTTTACACTGCCAAGCAACAAGTACTGTATGCACCTAATGTTCGCGTAAGGAAGAAGACTAGAGAGACCATACCT GAAGTGGTTGATCCAGATAAAGTGGTGGATGAAGCTGATAAGTTCATAAAGAAATCATTTTTCAGGAAAGTAGCACATGTTCAAGAGTTTGATCATTATG GACTTGAGTATTTGCCTGATCCTGCTCGTAAAGATGCTTTTGCACGTAAGCCTCGTGCTGAGACCCTTAAAGATGTAGGGGTCGATCCTAAACTACAGCT TTGA
AA sequence Show only first row Show all	>Potri.012G111000.2 pacid=42784216 polypeptide=Potri.012G111000.2.p locus=Potri.012G111000 ID=Potri.012G111000.2.v4.1 annot-version=v4.1 MAFRSMGYWKSIASRLSGTTTYATSTPPKLKSYAPTADQFGHHYHQESKHGKKVRGDFVPVYVAIGMIAVSISLGLYTAKQQVLYAPNVRVRKKTRETIP EVVDPDKVVDEADKFIKKSFFRKVAHVQEFDHYGLEYLPDPARKDAFARKPRAETLKDVGVDPKLQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07330			unknown protein		Potri.012G111000 [exp]	0	1
AT3G07150			unknown protein		Potri.002G244400 [exp]	2.00	0.9363
AT1G66510			AAR2 protein family (.1.2.3)		Potri.017G123900 [exp]	3.00	0.9316
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Potri.015G013900 [exp]	5.29	0.8942
AT1G53540			HSP20-like chaperones superfam...		Potri.010G175200 [exp]	5.91	0.9059	Pt-HSP17.8
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Potri.019G108800 [exp]	7.21	0.9213
					Potri.001G443150 [exp]	15.62	0.7999
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.009G015700 [exp]	16.06	0.9059	Pt-PM37.1
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Potri.007G070900 [exp]	20.37	0.8344
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Potri.017G146600 [exp]	22.27	0.9054
					Potri.001G054850 [exp]	22.58	0.7708

Compare expression of checked genes

Potri.012G111000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.