Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CNX1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61790 676 / 0 CNX1, ATCNX1 calnexin 1 (.1) AT5G07340 657 / 0 Calreticulin family protein (.1.2) AT1G09210 192 / 2e-55 AtCRT1b calreticulin 1b (.1) AT1G56340 191 / 3e-55 AtCRT1a, CRT1 calreticulin 1a (.1.2) AT1G08450 174 / 6e-49 AtCRT3, PSL1, EBS2, CRT3 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109200 [exp] 795 / 0 AT5G61790 710 / 0.0 calnexin 1 (.1) Potri.001G070600 [exp] 553 / 0 AT5G61790 582 / 0.0 calnexin 1 (.1) Potri.005G015100 [exp] 185 / 6e-53 AT1G56340 566 / 0.0 calreticulin 1a (.1.2) Potri.013G009500 [exp] 181 / 2e-51 AT1G09210 579 / 0.0 calreticulin 1b (.1) Potri.019G055200 [exp] 177 / 8e-50 AT1G08450 569 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.007G131500 [exp] 173 / 2e-48 AT1G08450 619 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.017G026300 [exp] 168 / 2e-46 AT1G08450 615 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043021 [exp] 677 / 0 AT5G61790 793 / 0.0 calnexin 1 (.1) Lus10032521 [exp] 676 / 0 AT5G61790 794 / 0.0 calnexin 1 (.1) Lus10010924 [exp] 195 / 2e-55 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031410 [exp] 185 / 2e-52 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010923 [exp] 184 / 1e-51 AT1G56340 616 / 0.0 calreticulin 1a (.1.2) Lus10031409 [exp] 183 / 1e-50 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10026849 [exp] 181 / 9e-50 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10020222 [exp] 177 / 4e-49 AT1G08450 586 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00262 [poplar] [flax] Calreticulin Calreticulin family
Representative CDS sequence Show only first row Show all	>Potri.012G111100.1 pacid=42782738 polypeptide=Potri.012G111100.1.p locus=Potri.012G111100 ID=Potri.012G111100.1.v4.1 annot-version=v4.1 ATGAGAGAAGCGAAACGTATCACTCTTCGATTGGCGATTGTGTTGTTGTTAGCTTTCGTTTCTTTCAATCAGCTCTTTGCTGACGATGATACGATCTTTC ATGAGACGTTTGACGAGTCGTTCAGTGGAAGATGGATTGTTTCGGAGAAAGAAGACTATAAAGGGGTGTGGAAGCGTGAAAAGAGTGAGGGACATGATGA TTATGGACTTCTTGTGAGTGAGCCGGCTAAGAAGTATGCCATTGTGAAGGAACTCGATGAGCCTGTGAGTCTTAAGGATGGAATTGTCCTCCAATTTGAG ACTCGCCTTCAGAGTGGGCTTGAATGTGGTGGTGCGTATTTGAAATATCTCCGACCACAGGAGGCTGGGTGGGTGCCCAAGGGGTTTGACAGTGAGTCTC CTTATTCGATTATGTTTGGACCTGACAAATGTGGTACCACAAACAAGGTTCATTTTATCTTGAAGCATAAAAACCCAAAGAGTGGGGAGTATGTTGAGCA TCACCTCAAGTTCCCACCTTCCGTTCCACACGACAAGCATACTCATGTGTACACCGCCATCTTGAAATCTGACAATGAGTTGCAAATTCTGGTTGATGGA GAGGAGAAGAAGAAGGCAAACTTCCTCACATCTGATGATTTTGAGCCCCCACTTGTCCCTGCCAAGACAATTCCTGATCCAGATGACGTGAAACCTGAGG ATTGGGATGAGAGAGCAAAAATTCCTGATCCTGAGGCAGCGAAGCCAGAGGACTGGGACGAGGATGCACCTCTTGAAATTGTAGATGAGGATGCTGTGAA ACCTGAAGGTTGGTTGGATGATGAGCCTGAGGAGATTGATGATCCTGAAGCTACAAAACCAGAAGATTGGGATGAAGAGGAGGATGGTGAATGGGAGGCA CCCAAGACTGATAACCCAAAGTGTGAGGAAGCCCCTGGTTGTGGTGAATGGAAGAAACCAATGAAGAGAAATCCAGCATACAAGGGAAAATGGCATGCTC CACTTATTGACAACCCCAACTACAAGGGTATCTGGAAGCCTCAGGATATTCCAAACCCCGACTACTTTGAGCTTGACCAGCCTGACTTTGAGCCCATTGC TGCTGTTGGTATTGAGATCTGGACAATGCAGGATGGCATATTGTTTGACAATATCTTGGTTGCAAAGGATGAGAAGGCTGCAGCTTCAATTAGGGATACA ACATGGAAGCCAAAGTTTGATGCTGAGAAGGAGAAACAGAAGGCTGAGGAAGCAGCTACTGGCACTGATGGTCTTGCTGGCTTCCAGAAGAAGGTGTTCG AACTCCTATACCAGGCTGCTGAGCTCTCTTTCCTAAGCAAGCACAAGGACAAAATTATTGAACTCATCGAGAAGGCAGAGAAACAACCGAACATCACAAT TGGTGTCCTTGTCTCCGTTGTGGTGGTGATCCTTACTCTTTTCTTCAGGATAATTTTTGGTGGAAAGAAGGCTAAGGTGGAGAAGAAACCTGAGCCAGTT GCGGAGACATCCAACAAGGAAGGAAGCAGCAGCGGCGATGAGAAGAAAGAAGAGACTGAGGCCGAGAATGAAGCTGCTGCTCCTGCTCGCAGGAGGCCAT CGAGGCGTGAGAACTGA
AA sequence Show only first row Show all	>Potri.012G111100.1 pacid=42782738 polypeptide=Potri.012G111100.1.p locus=Potri.012G111100 ID=Potri.012G111100.1.v4.1 annot-version=v4.1 MREAKRITLRLAIVLLLAFVSFNQLFADDDTIFHETFDESFSGRWIVSEKEDYKGVWKREKSEGHDDYGLLVSEPAKKYAIVKELDEPVSLKDGIVLQFE TRLQSGLECGGAYLKYLRPQEAGWVPKGFDSESPYSIMFGPDKCGTTNKVHFILKHKNPKSGEYVEHHLKFPPSVPHDKHTHVYTAILKSDNELQILVDG EEKKKANFLTSDDFEPPLVPAKTIPDPDDVKPEDWDERAKIPDPEAAKPEDWDEDAPLEIVDEDAVKPEGWLDDEPEEIDDPEATKPEDWDEEEDGEWEA PKTDNPKCEEAPGCGEWKKPMKRNPAYKGKWHAPLIDNPNYKGIWKPQDIPNPDYFELDQPDFEPIAAVGIEIWTMQDGILFDNILVAKDEKAAASIRDT TWKPKFDAEKEKQKAEEAATGTDGLAGFQKKVFELLYQAAELSFLSKHKDKIIELIEKAEKQPNITIGVLVSVVVVILTLFFRIIFGGKKAKVEKKPEPV AETSNKEGSSSGDEKKEETEAENEAAAPARRRPSRREN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.012G111100 [exp]	0	1	CNX1.2
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.001G087500 [exp]	2.82	0.8935	Pt-BIP.2
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.016G019800 [exp]	3.00	0.8533
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.005G241100 [exp]	4.00	0.8632
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.015G109200 [exp]	5.29	0.8514	CNX1.1
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Potri.001G180100 [exp]	5.47	0.8433	Pt-HSP91.2
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Potri.016G088600 [exp]	5.91	0.8497
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Potri.016G042100 [exp]	6.92	0.7994	Pt-GPT.3
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.003G143600 [exp]	7.00	0.8362	BIP.1
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	7.21	0.7976
AT1G34130		STT3B	staurosporin and temperature s...		Potri.012G036300 [exp]	8.66	0.7495	Pt-STT3.2

Compare expression of checked genes

Potri.012G111100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.