Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07350 1381 / 0 TSN1, AtTudor1 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2) AT5G61780 1370 / 0 TSN2, AtTudor2 Arabidopsis thaliana TUDOR-SN protein 2, TUDOR-SN protein 2 (.1) AT2G11271 50 / 6e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109300 [exp] 1798 / 0 AT5G07350 1377 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032520 [exp] 1501 / 0 AT5G07350 1359 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2) Lus10043020 [exp] 1498 / 0 AT5G07350 1353 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00565 [poplar] [flax] SNase Staphylococcal nuclease homologue CL0049 [poplar] [flax] Tudor PF00567 [poplar] [flax] TUDOR Tudor domain
Representative CDS sequence Show only first row Show all	>Potri.012G111200.2 pacid=42784335 polypeptide=Potri.012G111200.2.p locus=Potri.012G111200 ID=Potri.012G111200.2.v4.1 annot-version=v4.1 ATGGCTACGTCGACAGCTGGGGCTACAGGATGGTACAGAGGGAGAGTGAAAGCAGTTCCTTCAGGAGATAGCTTGGTGATAATGGCCGTGACAATCAATA AGCCTGGCCCTCCACCGGAAAAGACTATCACTTTGTCCTCTCTCATGGCCCCCAGATTGGCTCGTAGAGGTGGTGTTGATGAGCCGTTTGCCTGGCTGAG TAGAGAGTATTTGCGAAACCTCTGCATAGGAAAGGAAGTGACTTTCAAGGTAGATTATGCTGTCCCATCCATCGGAAGAGAATTTGGCTCTGTGTTCCTT GGTGACAAAAATGTTGCATTGCTGGTTGTGGCTGAAGGCTGGGCAAAGGTCAGGGAGCAGGGTCAGCAAAAAGGTGAAGCTAGTCCTTTTCTTGCTGACC TCCTACGCCTTGAAGAACAAGCTAAACAGGAGGGTCTTGGCCGATGGAGTAAGGCACCAGGAGCCTCAGAGGCATCCATCAGAAATCTACCCCCCTCTGC CATCGGTGATCCTAGTAACTTGGATGCCATGGATCTGCTAGCTAAAAATAAGGGAAGACCCATGCAAGGCATTGTGGAGCAGGTTCGTGATGGTAGCACT GTCCGTGTCTACTTGCTTCCAGACTTTCAATTTGTCCAAGTGTTTGTTGCCGGAATCCAGGCCCCATCGATGGGTAGAAGAGCTGCAGTCGAAACTGTTG CTGAAACAGAAACAATCTCTAATGAAACAAATGGTGATGCTTCTGGAGCTCTTGCTCCTTTAACATCTGCACAAAGACTTGCAGCCTCAACAACACCCCC AGAAGTTGCTCCTGACCCATTTGGGATGGAAGCCAAATATTTTACGGAGCTCCGTACTTTGAATAGGGATGTTCGCATTGTTCTGGAAGGTGTTGACAAG TTCAGCAATTTGATTGGATCAGTATATTATCCCGATGGGGAATCTCCAAAGGACCTGGCACTAGAGCTTGTGGAAAATGGTTTGGCTAAATTTGTTGAAT GGAGTGCCAACATGATGGAAGAAGATGCTAAACGGCAGCTGAAGACTGCAGAGCTTCAAGCCAAGAAAAGTCGCTTGAGGATGTGGACTAATTATGTACC CCCTGCTACAAATTCAAAAGCAATTCACGACCAGAATTTTACAGGAAAGGTGGTGGAGGTTGTAAGTGGTGATTGTGTTATTGTGGCCGATGATTCCGTG CCTTATGGCAGTCCATTGGCAGAGAGACGTGTCAATCTTTCAAGCATTAGGTGTCCAAAAATGGGTAATCCTCGCAGAGATGAAAAACCTGCTCCTTATG CCCGTGATGCTAAGGAGTTTCTGAGGACACGTCTTATTGGCCAACAAGTGAATGTGAGAATGGAATATTCTAGGAAGATGACAGATGGACCTACAGCTGC CCCTGTTCCTGGAGATGCAAGAGTTATGGATTTTGGATCCATCTTTCTGTTGTCTCACTCTAAAGGTGATGAAGCCTTGACAGTTCCATCCACTGCTGCT GGCCAGCAACCGGGGATTAATGTTGCTGAGCTGGTTGTTTCTCGTGGCTTTGGCACTGTGATTCGGCATAGAGATTTTGAGGAAAGATCAAACTTCTATG ATGCCCTTCTTGCTGCTGAATCACGAGCTATTGCTGGAAAGAAAGGGATCCATTCTGCAAAGGACCCTCCAGTCTCACATATTACAGACCTTACCACGGC ATCTTCCAAGAAAGCAAGGGAATTCTTGCCACACATGCACAAAAATAGGAGGATCTCTGCTGTTGTCGAATATGTCCTTAGTGGTCATCGTTTTAAACTA CTAATCCCCAAGGAAACATGTAGCATTGCCTTTTCATTCTCTGGCATTAGATGCCCTGGTCGTGATGAGCCCTACTCAGAAGAAGCAATTGCACTCATGA GACGAAAGATAATGCAGAGAGATGTTGAGATTGAAGTGGAAACTGTTGATAGAACTGGAACTTTCTTGGGATCGCTATGGGAGTCGAGGACTAACATGGG AGTGACTCTTCTTGAGGCTGGCCTTGCAAAGTTCCAAACTTCCTTTGGCACTGATAGGATCCCTGAGGCTCACCTTCTTGAACAGGCTGAGCAATCTGCC AAGAGGCAGAAACTGAAGATTTGGGAGAAATATGTTGAAGGAGAGGAAGTCAATAATGGTCCAGCTGTTGAAAGCAAACAGAAAGAAGTGCTCAAGGTAG TGGTTACAGAAGTCTTGGATGGTGGTAGGTTCTACGTCCAGACAGTTGGGGACCAGAAAATAGCCTCTATTCAGCAGCAACTTGCATCCCTCAGTCTCCA AGAAGCTCCTGTAATTGGTGCTTTTAACCCCAAGAGGGGTGACATTGTGCTTGCTCAGTTTAGCGCAGATAATTCATGGAACCGAGCAATGATTGTGAAT GCACCTCGTGGAGCTGTTGAATCACCCAAGGACAAGTTTGAGGTGTTCTACATTGATTACGGGAATCAAGAGGAGGTTCCATACAGTCATTTACGGCCTC TTGATCCATCAGTGTCAGCGGCATCTGGTCTTGCTCAGTTGTGCAGCTTAGCGTACATTAAGGTTCCAAGCTTGGAGGAGGATTGTGGTCCAGAAGCTGC CCAGTATTTTAGTGATAACACATTAAACAGTTCAAAAGAATTTAGGGCAAAGGTAGAAGAAAGGGATACTTCTGCAGGGAAAGTTAAAGGCCAGGGAACT GGACCAGTTCTTATTGTGACTCTGGTTGCTGTTGATTCAGAAATTAGCTTAAATGCTTCTTTAGTTCAGGAAGGGCTTGCCAGGATAGAAAAGAAGAAGA AGTGGGACTCTATGGAAAGAAAGGTAGCCCTAGATAATTTGGAAAAATTCCAGGATGAAGCCAGGGCTGATAGGCGTGGGCTGTGGGTGCATGGAGATAT CGAGTCAGATGACGAGGATGTGGTCCTTCCTGCTAAGAAGGCTGGTGGCCGTTGA
AA sequence Show only first row Show all	>Potri.012G111200.2 pacid=42784335 polypeptide=Potri.012G111200.2.p locus=Potri.012G111200 ID=Potri.012G111200.2.v4.1 annot-version=v4.1 MATSTAGATGWYRGRVKAVPSGDSLVIMAVTINKPGPPPEKTITLSSLMAPRLARRGGVDEPFAWLSREYLRNLCIGKEVTFKVDYAVPSIGREFGSVFL GDKNVALLVVAEGWAKVREQGQQKGEASPFLADLLRLEEQAKQEGLGRWSKAPGASEASIRNLPPSAIGDPSNLDAMDLLAKNKGRPMQGIVEQVRDGST VRVYLLPDFQFVQVFVAGIQAPSMGRRAAVETVAETETISNETNGDASGALAPLTSAQRLAASTTPPEVAPDPFGMEAKYFTELRTLNRDVRIVLEGVDK FSNLIGSVYYPDGESPKDLALELVENGLAKFVEWSANMMEEDAKRQLKTAELQAKKSRLRMWTNYVPPATNSKAIHDQNFTGKVVEVVSGDCVIVADDSV PYGSPLAERRVNLSSIRCPKMGNPRRDEKPAPYARDAKEFLRTRLIGQQVNVRMEYSRKMTDGPTAAPVPGDARVMDFGSIFLLSHSKGDEALTVPSTAA GQQPGINVAELVVSRGFGTVIRHRDFEERSNFYDALLAAESRAIAGKKGIHSAKDPPVSHITDLTTASSKKAREFLPHMHKNRRISAVVEYVLSGHRFKL LIPKETCSIAFSFSGIRCPGRDEPYSEEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNMGVTLLEAGLAKFQTSFGTDRIPEAHLLEQAEQSA KRQKLKIWEKYVEGEEVNNGPAVESKQKEVLKVVVTEVLDGGRFYVQTVGDQKIASIQQQLASLSLQEAPVIGAFNPKRGDIVLAQFSADNSWNRAMIVN APRGAVESPKDKFEVFYIDYGNQEEVPYSHLRPLDPSVSAASGLAQLCSLAYIKVPSLEEDCGPEAAQYFSDNTLNSSKEFRAKVEERDTSAGKVKGQGT GPVLIVTLVAVDSEISLNASLVQEGLARIEKKKKWDSMERKVALDNLEKFQDEARADRRGLWVHGDIESDDEDVVLPAKKAGGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Potri.012G111200 [exp]	0	1
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Potri.010G091100 [exp]	3.31	0.9224	Pt-RANGAP2.1
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	15.62	0.9142
AT3G27470			Protein of unknown function (D...		Potri.017G065200 [exp]	17.20	0.9112
AT4G24840			unknown protein		Potri.012G096100 [exp]	18.33	0.8944
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.001G159700 [exp]	20.12	0.9083
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	22.31	0.9114
AT5G07720			Galactosyl transferase GMA12/M...		Potri.015G061800 [exp]	28.14	0.8490
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.008G167800 [exp]	30.00	0.8795
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.009G067100 [exp]	30.85	0.9038
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.001G179200 [exp]	32.24	0.8957

Compare expression of checked genes

Potri.012G111200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.