Plant FIBer expression Database

Potri.012G111400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61760 404 / 1e-142 ATIPK2BETA ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1)
AT5G07370 389 / 7e-137 ATIPK2A, IPK2a inositol polyphosphate kinase 2 alpha (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G109500
[exp]
550 / 0 AT5G61760 394 / 2e-138 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020535
[exp]
424 / 2e-150 AT5G61760 354 / 6e-123 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1)
Lus10009385
[exp]
419 / 1e-148 AT5G61760 350 / 8e-122 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1)
Lus10020534
[exp]
320 / 1e-100 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10009397
[exp]
0 / 1 AT5G07370 96 / 3e-25 inositol polyphosphate kinase 2 alpha (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF03770 IPK Inositol polyphosphate kinase
Representative CDS sequence
>Potri.012G111400.1 pacid=42784365 polypeptide=Potri.012G111400.1.p locus=Potri.012G111400 ID=Potri.012G111400.1.v4.1 annot-version=v4.1
ATGCTTAAGGTCCCAGATCACCAGGTTGCGGGTCACAAAGGTGGTCATGGCCAGCCTGGTCCCCTCATTGATGATTCAGGGCGTTTCTACAAGCCTCTTC
AGGATGATGACCGGGGCGCGATAGAGGCTGCGTTTTATACCTCCTTCTCGTCGAACACGAGGGTTCCAGATCACATCCGAAGATTCTTTCCTGTTTTTCA
CGGGACTCAGCTAATAGAGGCATCTGATGGGTCTGGCCAGCGGCCGCACCTTGTTTTGGAGGATGTTGTCTCTGGTCGTTCGCATCCCTCGGTTATGGAT
GTTAAGATTGGTTCTAGAACTTGGTACCCTGAAGCTTCTGAGGATTACATCCAGCGATGCTTTGAGAAAGATAGGAAATCTAGTAGCTTGTGTTTGGGGT
TTAGGATTTCTGGGTTGCAGTTATATGGAAGTGAAGAGTCTGAGTTGTGGAAGCCGGAGAGAAAACTTGTTCAGAATCTTAGCGCGGATGGGGTTAGAGT
GGTGCTGAAGAACTTTGTTTCTTCCAATTCGCCAATTGATCCAAATTTGAACCCTGATTGTGCTTTTGCGTCAAGCGTTTATGGTGGTTCTTCTGGGATT
TTGGCTCAATTATTGGAGCTAAAGTCATGGTTTGAGGATCAAACCATCTACCATTTGAATTCTTGTTCCGTTCTCATGGTGTATGAAAAAAAGAAAGTGC
TAAAAGGAGGGAGTTCGGATGCTGAAGTTAAACTTATTGACTTCGCTCATGTCACAGAAGGCAACGGCATCATTGATCATAATTTCGTGGGTGGGCTCTG
CTCTTTGATAAAGTTCATCTCAGAGATTCTTACCAGTCCCGATGAGTGCACAACTAAAGTATGTTTGCAGAACTCTGACAACAAAAATGAGATTCTTACC
AGTTCCAATGAGTGCACAACCAAAGTTTGTTTGTAG
AA sequence
>Potri.012G111400.1 pacid=42784365 polypeptide=Potri.012G111400.1.p locus=Potri.012G111400 ID=Potri.012G111400.1.v4.1 annot-version=v4.1
MLKVPDHQVAGHKGGHGQPGPLIDDSGRFYKPLQDDDRGAIEAAFYTSFSSNTRVPDHIRRFFPVFHGTQLIEASDGSGQRPHLVLEDVVSGRSHPSVMD
VKIGSRTWYPEASEDYIQRCFEKDRKSSSLCLGFRISGLQLYGSEESELWKPERKLVQNLSADGVRVVLKNFVSSNSPIDPNLNPDCAFASSVYGGSSGI
LAQLLELKSWFEDQTIYHLNSCSVLMVYEKKKVLKGGSSDAEVKLIDFAHVTEGNGIIDHNFVGGLCSLIKFISEILTSPDECTTKVCLQNSDNKNEILT
SSNECTTKVCL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61760 ATIPK2BETA ARABIDOPSIS THALIANA INOSITOL ... Potri.012G111400
[exp]
0 1
AT2G42620 PPS, PP2, ORE9,... PLEIOTROPIC PHOTOSIGNALING, OR... Potri.011G066700
[exp]
1.73 0.8354
AT4G37870 PCK1, PEPCK phosphoenolpyruvate carboxykin... Potri.002G107700
[exp]
7.74 0.7838
AT1G55140 Ribonuclease III family protei... Potri.003G038400
[exp]
11.22 0.7864
AT1G02680 TAF13 TBP-associated factor 13 (.1) Potri.014G122500
[exp]
11.61 0.7695
AT5G18140 Chaperone DnaJ-domain superfam... Potri.013G058100
[exp]
13.63 0.7869
AT4G08540 DNA-directed RNA polymerase II... Potri.002G090900
[exp]
15.42 0.7488
AT1G56180 unknown protein Potri.010G171400
[exp]
15.81 0.8256
AT2G25920 unknown protein Potri.002G198400
[exp]
17.88 0.7495
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Potri.017G124500
[exp]
18.81 0.7957
AT4G13590 Uncharacterized protein family... Potri.003G174600
[exp]
26.49 0.7744

Potri.012G111400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.