Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07400 881 / 0 FHA forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032515 [exp] 1031 / 0 AT5G07400 931 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1) Lus10043015 [exp] 630 / 0 AT5G07400 608 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain CL0479 [poplar] [flax] PLD PF06087 [poplar] [flax] Tyr-DNA_phospho Tyrosyl-DNA phosphodiesterase CL0479 [poplar] [flax] PF08797 [poplar] [flax] HIRAN HIRAN domain
Representative CDS sequence Show only first row Show all	>Potri.012G111800.1 pacid=42784203 polypeptide=Potri.012G111800.1.p locus=Potri.012G111800 ID=Potri.012G111800.1.v4.1 annot-version=v4.1 ATGAAGGATTCAATTCTTCCTTCCAATAAAAAAAGAACAATTGAAAGGAAAGAAAATGAGAATCTCTCATCAAAATCCCCAATTTTGCTCAAAAAACCCA AACAAATTGCCAAAGCAGCCCTAATTCGCCTCCAAACTTTCAATTTTCCTTTGATTTCACCGGTCACGGGTTCACCTATCAGCTCAATCAGTCTAGTACC GGACCGGCTTTACACTATTGGTCGAACCGGTGATTTTCAGTTCAAAAATCGGTGTGTAAGTAAGCAACATTGTCAGATTTTATTTGATAGTTACAAACGC AAGATTTATATACATGATGGTGTTTTATTATCGAAAACTGTTGATAACAGTGGAAATGATTGTGTTGTTAGTGAATTCAGGAGAAGGTTAATTTGTTGTG ATGATAATGAATTGGAAAGTGAGAGGATTAATGAGGGTCTGAGTTTTAGTGTTTCATTGAATGGGGTTTTTGTTAATGGGGTTAGGGTGAAAAAAGGGAT GGTGAGGGAATTGTGTGCAGGGGATGAGGTTTTGCTTGTTTGTGGTAATGAGGGGAATTGTAGTTTAGGGGGTAGAATTGGGTTTTTGATTAAAGGGGTT GCTTTTAAGGAGGAGGTGGTTACGGGGCCGAATGAGGTTCGGGTGGAGAGAGACTGGTTGTTTGAGTCGATTGGACAATCGCAAGGATTGGTGTCCAGTG GTAGTGGAAACAAAAGGGTTTTTGCTATCCGGGGAGATGAGATTATGGTTTCAGATTTTGATTTTCAGGGGCGGAAATGTGGGGGTGCTATTGAGAGATC TAGATTTCTGTTGAGTCAGTGTAGAGATGTGCTGCATAGTGATGACCCCATATCTTATATTATGCAATGCAATTTATTAAATTTTGAAATGGATGTGCCT TGTGTTTGTATTGACAAATCAAACTACTCTGTTGATGTTGCTGTAAGTGATAGAAGTAAATTCCCTGTTCAAAGGGAAAAGGTGGTAAATGGTGGTGTGC CTTTGGTCAGGGATGAAGTGCAACATCATAACTTGCAAATTGATCAGGATATCCATACTGATAGAGCAAAGAATGAGAGAGACCATGTTTGTGCTGGAGG TGGCCATTTATATCAAAAAGACATGTCTACAGTTTGTTTTGAGAGTTTTGTTGCGAAAAATGCTTGTAAGACTTCCTCATTGAATACCATGGGTAACGAG AGTGCACCTGTTGCCAACAGCTTTATCCAGATGAACACTTGGAAAAATTGTTGTCCGCCACCCGGGAAGAAGTTTTACCTGAATCGTCTCCAATTTATGG ACCATGGTTCATTCACCCATCCCAACGTTATTTCTTTGCCAGAACTTCTCTATCCAGTTGAAAGCATTTCAAGAATATTTATTGCAACCTTTACAAGTGA TATTTTATGGTTTCTATCACATTGTGAGATTCCGTGCCATCTGCCAGTGACAATTGCATGTCATAACACCGAGAGATGTTGGAGTTCCAGCCCTGATAAT AGAACCTCTGTGCCTTACTCAGATTTTCCAAACTTAGTTGTTGTGTTTCCCCCATTCCCTGAGTCTATAGCATTTGGTCAAGACCGCAAGAGGCGAGGGA TTGCTTGCCATCATCCAAAATTGCTTGTTCTGCAAAGAGAAGATAGCATTCGTGTTATCATTACTTCTGCAAATTTAGTGTCTAATCAGTGGAATAATGT GACCAACACAGTGTGGTGGCAAGATTTTCCAGCTAGAAGTGCACCTGATCCTTCACCTCTATTTATTCGAGTTTCTGATGGAGATGCAAATAAAGATTCA AGATCCGATTTCGCTGCTCAGCTGGCTGGCTTCATGGCATGTCTTGTGATCAATGTACCTAGTCAGGCCTATTGGATTTCTGAGTTGACAAAATACGACT TTGAAGGGGCAAATGGACATCTAGTTGCTTCAGTACCAGGGATTCATTCTCGCAGATCTCCCAATGCTTATCAGTTGCCATCAGGGTCATCTGGTGTGCA ATTCCTTGGCTCAGTTGAAGCTTCTGTTGTTGGATTAAGCCACCTTTTTCACACTGCAGCTGACAGAAATGGCACGCAGCTGAAGCAACTGGCTGCTTTC CTAGGGAAATGTTGTGAAAATGTATATGGGATGTCAGAGATTGTTCTGAGAAGAAACCTCAATGTGCCTGCAGATGTGAATGCTGTGAGCATTCTGGTTC CTAACCCCGATCAATTTTCTGAAGGAGATTGTATTCAACTTGGTTTTCTGCCTAGAAATGTTGCAAAGTGGGTTTCTCCATTGTGGGATAGTGGATTCTT CAGATTCTCTGGATATGTTTATCCTAAAGAAGCCCTTGCTGCTGCTTTAGGAGGAAGCAACAGGAAAGTGCATCTGATACTACATGTGGCACAGGGGCCT TGCTTTCCAAATATGATGAGTTTGATGCAAACTGAACACGTTCTTGCATTTTGCTCTCTTGTTGCTTCAATTCAGAGGTGTACTGGCATTTGGCGACTGG AAGAGGTTCTAGGTCAGTACAAATGGCCTGATTCTCAACAATCTGATTTCATTTATGGCTCGTCCTCTATTGGATCTGTCAATGCACAATTTCTGGCTGC GTTTTCAGCAGCTGCTGGAAAAAGATCACCAGAACTCTTTGATTCTGAAGAATCTGATCCAGAGTGGGGCTGCTGGAGTGCTAGTCAAGAGTTGAGAAAT CCATCAATCAAGATTATTTTTCCTACAATTGAGAGAGTGAAGAATGCATGCAATGGGATCTCGCCATCGAGGCGCATTCTTTGTTTTTCGGAGAAAACAT GGCAACGGTTGAGAAGTGTGGGGATACTTCATGATGCAATTCCTCATCCATATGATAGAGTAGGCCAGCCAATGCATGTCAAGGTTGCACGGAGACGCTT CCAGTCTAAGACGAATGCATCTTCTTTTGGTTGGGTTTATTGTGGGTCACATAATTTTAGTGCTGCTGCCTGGGGACGACTAATCTCCAATCCATTCGGT TTGAAATCAAAGGAAACTGGGAAAACCAACACTTATTTGAGTTCGAGGCTTCATGTTTCTAATTATGAACTTGGAATCATTTTCACCTTCCCTCCAACAG AGACAAAGGGTATCACAAACAAAGATTGTACAAACTTGGATGATATTGTTTTGCCATTTGCTGTGCCAGCTCCCAAGTATGGACCGACAGATCGACCAGC AACAGCAAGAGCTATGAGCGAGGCAGTAGCTGAACTTGCTGGGCTAGAGAGAGACAGACTCATAGCTGAAGAAATGATAGAAGAGATTCCTGATGAAGAG GAGGAAGCTGTCGAGGCAACTGATTATGCTGCAGTGGAGAAGGAAGAGGAGAAAGCTTATGCTGAGATGCTATGGAACCAGGTCGATTCATCTCAAAGGT TTTGA
AA sequence Show only first row Show all	>Potri.012G111800.1 pacid=42784203 polypeptide=Potri.012G111800.1.p locus=Potri.012G111800 ID=Potri.012G111800.1.v4.1 annot-version=v4.1 MKDSILPSNKKRTIERKENENLSSKSPILLKKPKQIAKAALIRLQTFNFPLISPVTGSPISSISLVPDRLYTIGRTGDFQFKNRCVSKQHCQILFDSYKR KIYIHDGVLLSKTVDNSGNDCVVSEFRRRLICCDDNELESERINEGLSFSVSLNGVFVNGVRVKKGMVRELCAGDEVLLVCGNEGNCSLGGRIGFLIKGV AFKEEVVTGPNEVRVERDWLFESIGQSQGLVSSGSGNKRVFAIRGDEIMVSDFDFQGRKCGGAIERSRFLLSQCRDVLHSDDPISYIMQCNLLNFEMDVP CVCIDKSNYSVDVAVSDRSKFPVQREKVVNGGVPLVRDEVQHHNLQIDQDIHTDRAKNERDHVCAGGGHLYQKDMSTVCFESFVAKNACKTSSLNTMGNE SAPVANSFIQMNTWKNCCPPPGKKFYLNRLQFMDHGSFTHPNVISLPELLYPVESISRIFIATFTSDILWFLSHCEIPCHLPVTIACHNTERCWSSSPDN RTSVPYSDFPNLVVVFPPFPESIAFGQDRKRRGIACHHPKLLVLQREDSIRVIITSANLVSNQWNNVTNTVWWQDFPARSAPDPSPLFIRVSDGDANKDS RSDFAAQLAGFMACLVINVPSQAYWISELTKYDFEGANGHLVASVPGIHSRRSPNAYQLPSGSSGVQFLGSVEASVVGLSHLFHTAADRNGTQLKQLAAF LGKCCENVYGMSEIVLRRNLNVPADVNAVSILVPNPDQFSEGDCIQLGFLPRNVAKWVSPLWDSGFFRFSGYVYPKEALAAALGGSNRKVHLILHVAQGP CFPNMMSLMQTEHVLAFCSLVASIQRCTGIWRLEEVLGQYKWPDSQQSDFIYGSSSIGSVNAQFLAAFSAAAGKRSPELFDSEESDPEWGCWSASQELRN PSIKIIFPTIERVKNACNGISPSRRILCFSEKTWQRLRSVGILHDAIPHPYDRVGQPMHVKVARRRFQSKTNASSFGWVYCGSHNFSAAAWGRLISNPFG LKSKETGKTNTYLSSRLHVSNYELGIIFTFPPTETKGITNKDCTNLDDIVLPFAVPAPKYGPTDRPATARAMSEAVAELAGLERDRLIAEEMIEEIPDEE EEAVEATDYAAVEKEEEKAYAEMLWNQVDSSQRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07400	FHA		forkhead-associated domain-con...		Potri.012G111800 [exp]	0	1
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Potri.006G220000 [exp]	1.73	0.9004
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Potri.014G071400 [exp]	2.82	0.9007
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	3.46	0.9062	CPC902,TTN8.3
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.006G263700 [exp]	5.47	0.8819
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	7.74	0.8925	TTN8.2
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	8.94	0.8720
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	9.79	0.8807
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.002G119900 [exp]	11.48	0.8673
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	14.14	0.8731
AT2G24530			unknown protein		Potri.018G005700 [exp]	15.58	0.8445

Compare expression of checked genes

Potri.012G111800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.