Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33990 518 / 9e-174 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 501 / 3e-168 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 489 / 2e-163 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 486 / 5e-163 MEF22 mitochondrial editing factor 22 (.1) AT1G11290 486 / 1e-161 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 482 / 1e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 487 / 7e-161 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 480 / 2e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 472 / 5e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 455 / 2e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322100 [exp] 510 / 1e-172 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 511 / 6e-172 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 509 / 9e-172 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 509 / 3e-170 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 498 / 1e-167 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 497 / 1e-166 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 494 / 2e-166 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 494 / 2e-165 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.005G005700 [exp] 492 / 2e-165 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019735 [exp] 510 / 7e-171 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 505 / 1e-169 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 496 / 4e-167 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 497 / 1e-165 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 492 / 1e-164 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 486 / 8e-163 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 477 / 2e-157 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10033026 [exp] 473 / 3e-157 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 472 / 6e-156 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10001220 [exp] 473 / 1e-155 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.012G111900.1 pacid=42782755 polypeptide=Potri.012G111900.1.p locus=Potri.012G111900 ID=Potri.012G111900.1.v4.1 annot-version=v4.1 ATGCACCGGTTGGGATCGCTACTCTCTCATAAACCTCTCTTAAACCCTCGAGCTCCTCTATACTCCCTCATCTCATCCTCCACTTTTAGCTACTCTCCTA ATTCCATAGAAATCTTCTATGACCATCTCTTAAAATCCTGTAATGGGTCATCCTCTCTCAAACAAATTCACTCAGCTCTCACAACCACTGGCCTTATCAC TACAAGCCCTCATTTGGGTGCTCAGATTATCATCAAATATGCAAAATTTGATGACCTTAATAGGGCAAGATTACTTTTTGATAACATTAATGTATGTTAT GATAAACCCACTTCTTTCCTTTGTAATACTATGATTAGGGCATATGCAAATGTTGGTCAATGTTTTGAAACGTTAAAGTTGTATTCTTTCATGCGTAAGA CTGGCACTTTTGTGAATAATTACACTTACCCTTTCGTGTTCAAAGCTTGTGCTTTGAATTTGTTGGTTCGTGAAGGGAAAGTTGTTCATGGAGATGCTTT AAAAAATGGGTTCGGTTCGGATTTGTATGTTGAGGCTGGTTTGGTTGACATGTACGCAAAATGTGGCCTTTTTGTTGATTGTCGCAAGATTTTCGACGAA ATGTCTACGAAGGATTTAGTTTGCTGGACAGCAATGATAACTGCTTATGAGCAGGCTGAGAAGCCTGAGGAGGCTCTCATTTTGTTCAAAAAGATGCAGC AAGAAGAGGGTCTTCTAGCAGATTCGATTGCTGTAGTGAGTGTTGCATCTGCTGTTGGTCAATTAGGAGATGTTAAGAACGCTCACACAGTGCATGGTTA TGCCTTTCGTAAATCGTTGATTGAGGAATTATGTGTTGGTAACTCAATTTTAGCTATGCATACAAAATGCGGGAATACAGAAAAGGCACGTTTGGTTTTT GATATGATGATGGAAAGAGATGTTATCTCATGGAATTCTATGCTTTCTGGTTATACTCAAAATGGGCAAGCCACTGAAGCTCTGTTGCTGTTTGATGAGA TGCGTGATTCTGATTGTCAGCCTACTCCTGTTACGGCATTGATCATGGTTTCAGCTTGTGCTTATTTGGGTTTTCGACATCTTGGAAGGAAATTCCATGA TTTTATCGTCGATAGCAGAATGGAAATTGACACAAATCTTTCAAATGCTCTGATGGACATGTATGCCAAGTGTGGAGACTTGGAAAAGGCGGTGGATTTG TTCAATGGTATTCCTCCCACTGAACGGAATGCTGGTTCTTGGAATGTATTGATTTCAGGGTATGGCATGCATGGACATGGTAAAGAAGCACTAGAACTCT TTTCAAGAATGCAGGAGGAAGGTGTTGAGCCAAACCATTTCACTTTCACTTCAATTCTTTCTGCTTGCAGCCATGCAGGCCTCATTGATGAAGGTAGGAA ATGTTTTGCAGAAATGAAAAGGCTATCTGTGACACTGGAGGATAAACACCATGCTTGTGTGGTTGATATGCTTGGCCGAGCTGGGCTCTTGCAGGAAGCA TTTGATCTGATTAAGGAAATGCCATCACCTCCGAGTGATGGAGTATGGGGTGCTCTGCTGCTTGCTTGCAAAATCCATGGGAACATGGAATTAGGGAAAA CTGCAGCCAGTAATCTACTCCAGCTTGAGCCAAACCATACAGGGTACTATGTGCTAATGTCTAACATATATGCAGCATCAAACAAATGGAAAGAAGTTTG GAAGTTGAGGCAAGATATGAAGAATAAAGGATTAAAGAAACCTGCAGCCTTTAGTATGATCGAGTATGGTAAAGATATTCTTGGGTTCCACACAGCTGAC CAAGAAAATCCATATAGGCACGAAGTTTACAAAAAAATGGAAAGCCTAGCAATCGAGATGAAGATGGCTGGGTATGTACCAGACCTATCATGTGCTCTAC ATGATGTCGAAGAGGAAGACAAGGAGCGTATGTTAAACTATCACAGCGAGAAGCTAGCTGTAGCTTTTGGTGTTCTGAAGATAGACCCTGGAATGGTAAT TCGAGTAACAAAAAATCTTCGTGTTTGCAATGACTGTCATTCAGCGTTTAAGTATATTTCACACATTTATCAACGAAAGATCATTGTCAGAGATGCAAAT CGGTTCCATCACTTCCAGGGAGGTACCTGCTCATGTAAGGACTACTGGTGA
AA sequence Show only first row Show all	>Potri.012G111900.1 pacid=42782755 polypeptide=Potri.012G111900.1.p locus=Potri.012G111900 ID=Potri.012G111900.1.v4.1 annot-version=v4.1 MHRLGSLLSHKPLLNPRAPLYSLISSSTFSYSPNSIEIFYDHLLKSCNGSSSLKQIHSALTTTGLITTSPHLGAQIIIKYAKFDDLNRARLLFDNINVCY DKPTSFLCNTMIRAYANVGQCFETLKLYSFMRKTGTFVNNYTYPFVFKACALNLLVREGKVVHGDALKNGFGSDLYVEAGLVDMYAKCGLFVDCRKIFDE MSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVF DMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDL FNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEA FDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTAD QENPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDAN RFHHFQGGTCSCKDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.012G111900 [exp]	0	1
AT5G04520			Protein of unknown function DU...		Potri.010G233000 [exp]	2.00	0.8199
AT1G09800			Pseudouridine synthase family ...		Potri.003G008500 [exp]	3.16	0.7822
AT3G14580			Pentatricopeptide repeat (PPR)...		Potri.001G379500 [exp]	8.12	0.7722
AT4G17180			O-Glycosyl hydrolases family 1...		Potri.006G002100 [exp]	9.79	0.7418
AT4G14820			Pentatricopeptide repeat (PPR)...		Potri.010G086200 [exp]	9.89	0.7171
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.004G042500 [exp]	12.00	0.7478
AT5G16320		FRL1	FRIGIDA like 1 (.1)		Potri.002G206200 [exp]	14.38	0.6485	Pt-FRL1.1
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Potri.002G225700 [exp]	14.79	0.6454
AT5G66631			Tetratricopeptide repeat (TPR)...		Potri.005G128600 [exp]	16.73	0.7438
AT3G15130			Tetratricopeptide repeat (TPR)...		Potri.006G244500 [exp]	18.43	0.7101

Compare expression of checked genes

Potri.012G111900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.