Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02170 460 / 9e-163 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT4G25110 390 / 1e-134 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT5G64240 302 / 1e-100 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2) AT1G79340 105 / 3e-25 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79330 104 / 9e-25 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT1G79310 103 / 2e-24 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT1G79320 98 / 1e-22 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT5G04200 92 / 8e-21 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT1G16420 81 / 2e-16 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G113100 [exp] 615 / 0 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 561 / 0 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.014G052500 [exp] 464 / 2e-164 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053100 [exp] 347 / 3e-117 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052600 [exp] 248 / 2e-79 AT1G02170 254 / 8e-82 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 231 / 6e-73 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052900 [exp] 209 / 3e-64 AT1G02170 198 / 6e-60 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.010G175000 [exp] 108 / 2e-26 AT1G79340 496 / 2e-175 metacaspase 2d, metacaspase 4 (.1) Potri.008G081100 [exp] 103 / 1e-24 AT1G79330 510 / 0.0 metacaspase 2b, metacaspase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028157 [exp] 452 / 2e-158 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10042857 [exp] 410 / 2e-143 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10015843 [exp] 320 / 1e-106 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10009321 [exp] 311 / 1e-103 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10010766 [exp] 292 / 3e-98 AT1G02170 293 / 1e-98 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035628 [exp] 246 / 1e-78 AT1G02170 270 / 4e-88 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035630 [exp] 214 / 3e-66 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10010764 [exp] 222 / 2e-64 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10001761 [exp] 101 / 2e-23 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10001835 [exp] 100 / 4e-23 AT1G79340 554 / 0.0 metacaspase 2d, metacaspase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF00656 [poplar] [flax] Peptidase_C14 Caspase domain CL0093 [poplar] [flax] PF06943 [poplar] [flax] zf-LSD1 LSD1 zinc finger
Representative CDS sequence Show only first row Show all	>Potri.012G112700.1 pacid=42784027 polypeptide=Potri.012G112700.1.p locus=Potri.012G112700 ID=Potri.012G112700.1.v4.1 annot-version=v4.1 ATGTACATGTTAGTCAACTGTTCAAACTGCCACACCCTTTTGCAGCATCCACCAGGAGCCAACTCCATCTGCTGTGCCATCTGCCATGCCATCACCTACA TAGCTGATCCTCGCTCTGCCCCACCACCGCCTGCTCGATCTTACTCATCCTCGAGCCACTACCAACATTACCCTCCTCCACCTCATCCTTTTCAGGTGGT TCCATCACCATTCACTCATGCGCCTCATGGACCACCACCTGCTGTCCATGGCACAAAGCGTGCTGTGATTTGTGCGGTATCTTATAAGAATACTAAGAAT GAACTCAAAGGGTGCATCAATGATGCCGTGTGCATTAAGTATTTGTTGGTTAATAGGTACAACTTCCCTGAATCCTCCATCATCATGCTCACTGAGGAAG AAACTGAGCCTTATAGGCAGCCAACGAAATTCAACATGAGATTGGCATTGTCATGGCTCGTGCAAGGATGTCAGCCTGGAGATTCATTAGTGTTTCATTT TTCCGGTCATGGTTCGCAGCAGAAGGATTACAATGGAGATGAGTTGGATGGATATGATGAAACACTTTGTCCAACAGATTTTGAAACTCAAGGAATGATT GTTGATGATGAGATCAATGCAGTAATTGTCAAGCCTATTTCCCATGGTGTTAAGCTTCTTGCCATCATTGATGCTTGCCATAGTGGCACTGTGCTGGATT TACCGTTTCTCTGCAGAATGGATAGGAGCGGGAAGTATGTCTGGGAAGATCATCGCCCTCGATCAGGAGTATGGAAAGGGACTAGTGGTGGGGAAGTGAT CTCCTTCAGTGGCTGCGATGATGATCAAACCTCTGCAGACACTTCGGCTCTATCGAAGATCACTTCAACAGGTGTAATGACTTATTCGTTCATCCAAGCA ATCGAGCGCGGACATGGAACTACATATGGCAGCGTGCTGAATGCAATGCGGGCTACCATCCGTAAGACGACCAATGAGCATGGTGGTGGTATTGTAACAA CACTTATCTCAATGCTATTAGCAGGGGGGAATTTCAGCGGAGGGATCACACAGGAACCACAGTTAACTGCTAGCGAACCATTTGATGTGTATTCAAAACC TTTCTCCTTGTAG
AA sequence Show only first row Show all	>Potri.012G112700.1 pacid=42784027 polypeptide=Potri.012G112700.1.p locus=Potri.012G112700 ID=Potri.012G112700.1.v4.1 annot-version=v4.1 MYMLVNCSNCHTLLQHPPGANSICCAICHAITYIADPRSAPPPPARSYSSSSHYQHYPPPPHPFQVVPSPFTHAPHGPPPAVHGTKRAVICAVSYKNTKN ELKGCINDAVCIKYLLVNRYNFPESSIIMLTEEETEPYRQPTKFNMRLALSWLVQGCQPGDSLVFHFSGHGSQQKDYNGDELDGYDETLCPTDFETQGMI VDDEINAVIVKPISHGVKLLAIIDACHSGTVLDLPFLCRMDRSGKYVWEDHRPRSGVWKGTSGGEVISFSGCDDDQTSADTSALSKITSTGVMTYSFIQA IERGHGTTYGSVLNAMRATIRKTTNEHGGGIVTTLISMLLAGGNFSGGITQEPQLTASEPFDVYSKPFSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.012G112700 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Potri.005G030318 [exp]	4.69	0.8237
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	7.07	0.7889
AT4G35100		SIMIP, PIP3A, P...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.005G109200 [exp]	7.34	0.7875	MDPIP1.5
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.001G007501 [exp]	9.32	0.8002
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Potri.014G115600 [exp]	11.95	0.7772
AT5G36930			Disease resistance protein (TI...		Potri.011G012000 [exp]	12.32	0.7965
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219600 [exp]	13.41	0.7789
AT3G42170			BED zinc finger ;hAT family di...		Potri.016G027201 [exp]	16.12	0.7558
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.012G079500 [exp]	17.00	0.7610
AT1G69550			disease resistance protein (TI...		Potri.005G031899 [exp]	17.54	0.7829

Compare expression of checked genes

Potri.012G112700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.