Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02170 471 / 3e-167 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT4G25110 398 / 1e-137 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT5G64240 308 / 6e-103 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2) AT1G79310 101 / 8e-24 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT1G79330 101 / 1e-23 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT1G79340 99 / 1e-22 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79320 97 / 2e-22 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT5G04200 94 / 2e-21 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT1G16420 81 / 2e-16 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G112700 [exp] 611 / 0 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 564 / 0 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.014G052500 [exp] 466 / 3e-165 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053100 [exp] 353 / 9e-120 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052600 [exp] 252 / 8e-81 AT1G02170 254 / 8e-82 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 229 / 6e-72 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052900 [exp] 214 / 6e-66 AT1G02170 198 / 6e-60 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.010G175000 [exp] 105 / 5e-25 AT1G79340 496 / 2e-175 metacaspase 2d, metacaspase 4 (.1) Potri.008G081100 [exp] 102 / 6e-24 AT1G79330 510 / 0.0 metacaspase 2b, metacaspase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028157 [exp] 462 / 2e-162 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10042857 [exp] 421 / 1e-147 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10015843 [exp] 326 / 4e-109 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10009321 [exp] 317 / 9e-106 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10010766 [exp] 298 / 2e-100 AT1G02170 293 / 1e-98 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035628 [exp] 252 / 5e-81 AT1G02170 270 / 4e-88 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035630 [exp] 220 / 1e-68 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10010764 [exp] 229 / 6e-67 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10012106 [exp] 104 / 4e-25 AT5G04200 392 / 2e-137 metacaspase 2f, metacaspase 9 (.1) Lus10001761 [exp] 100 / 3e-23 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF00656 [poplar] [flax] Peptidase_C14 Caspase domain CL0093 [poplar] [flax] PF06943 [poplar] [flax] zf-LSD1 LSD1 zinc finger
Representative CDS sequence Show only first row Show all	>Potri.012G113100.4 pacid=42784079 polypeptide=Potri.012G113100.4.p locus=Potri.012G113100 ID=Potri.012G113100.4.v4.1 annot-version=v4.1 ATGTACATGTTAGTCAACTGTTCAAACTGCCACACCCCTTTGCAGCTTCCACCAGGAGCCAACTCCAACTCCATCTGCTGTGCCATCTGCCATGCCATCA CCTACATAGTTGATCCTCGCTCTGCCCCACCACCGCCTGCTCTATCTTACTCATCCTCGAGCCAATACCAACATTACCCTCCCCAACCTCATCCTTTTCA AGTGGTTCCATCACCATTCAGTCATGCGCCTCCTGGACCACCACCTGCTGTCCATGGCCCAAAGCGTGCTGTGATTTGTGCGGTGTCTTATAAGAATACT AAGAATGAACTCAAAGGGTGCATTAATGATGCCATGTGCATGAAGTATTTGTTGGTTAATAGGTTCAACTTCCCTGGATCCTCCATCATCATGCTCACTG AGGAAGAGAGTGATCCTTATAGGCGGCCAACGAAATCCAACATGAGATTGGCATTGTCATGGCTCGTGCAAGGATGTCAGCCTGGAGATTCATTAGTGTT TCATTTTTCCGGTCATGGTTCGCAGAAGAAGGATTACAATGGAGATGAGTTGGATGGATATGATGAAACACTTTGTCCAACAGATTTTGAAACTCAAGGA ATGATTGTTGATGATGAGATCAATGCAGTAATTGTCAAGCCTATTTCCCATGGTGTTAAGCTTCATGCCATCATTGATGCTTGCCATAGTGGCACTGTGC TGGATTTACCGTTTCTCTGCAGAATGGATAGGAGCGGCAAGTATGTTTGGGAAGATCATCGCCCTCGATCAGGAGTATGGAAAGGGACAAGTGGTGGGGA AGTGATCTCCTTCAGTGGCTGCGATGATGATCAAACCTCTGCAGACACTTCGGCTCTATCCAAGATCACTTCAACAGGTGTAATGACTTATTCGTTCATC CAAGCAATCGAGCGCGGACATGGAACTACATACGGCAGCATGCTAAATGCAATGCGGGCTACCATCCGTAAGACGATCAATGAGCTCGGTGGTGGTATTG TGACAACACTTATCTCAATGCTATTAGCAGGGGGGAATTTCAGCGGAGGGATCACACAGGAACCACAGTTAACTGCTAGCGAACCATTTGATGTGTATTC AAAACCTTTCTCCTTGTAA
AA sequence Show only first row Show all	>Potri.012G113100.4 pacid=42784079 polypeptide=Potri.012G113100.4.p locus=Potri.012G113100 ID=Potri.012G113100.4.v4.1 annot-version=v4.1 MYMLVNCSNCHTPLQLPPGANSNSICCAICHAITYIVDPRSAPPPPALSYSSSSQYQHYPPQPHPFQVVPSPFSHAPPGPPPAVHGPKRAVICAVSYKNT KNELKGCINDAMCMKYLLVNRFNFPGSSIIMLTEEESDPYRRPTKSNMRLALSWLVQGCQPGDSLVFHFSGHGSQKKDYNGDELDGYDETLCPTDFETQG MIVDDEINAVIVKPISHGVKLHAIIDACHSGTVLDLPFLCRMDRSGKYVWEDHRPRSGVWKGTSGGEVISFSGCDDDQTSADTSALSKITSTGVMTYSFI QAIERGHGTTYGSMLNAMRATIRKTINELGGGIVTTLISMLLAGGNFSGGITQEPQLTASEPFDVYSKPFSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.012G113100 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G010101 [exp]	2.44	0.9465
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019500 [exp]	4.89	0.8809
AT5G36930			Disease resistance protein (TI...		Potri.019G019053 [exp]	7.74	0.8966
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.001G062500 [exp]	10.19	0.8979
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G004900 [exp]	10.95	0.8902
AT3G18670			Ankyrin repeat family protein ...		Potri.006G062900 [exp]	11.22	0.8885
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.016G105900 [exp]	12.72	0.8612
AT5G65280		GCL1	GCR2-like 1 (.1)		Potri.007G096500 [exp]	12.72	0.8841
AT3G57450			unknown protein		Potri.009G058500 [exp]	16.49	0.8636
					Potri.001G371850 [exp]	18.43	0.8840

Compare expression of checked genes

Potri.012G113100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.