Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19910 240 / 2e-81 MED31 SOH1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110900 [exp] 307 / 1e-107 AT5G19910 230 / 2e-77 SOH1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021434 [exp] 268 / 3e-92 AT5G19910 251 / 1e-85 SOH1 family protein (.1.2) Lus10016131 [exp] 265 / 1e-89 AT5G19910 254 / 6e-85 SOH1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05669 [poplar] [flax] Med31 SOH1
Representative CDS sequence Show only first row Show all	>Potri.012G113400.1 pacid=42783437 polypeptide=Potri.012G113400.1.p locus=Potri.012G113400 ID=Potri.012G113400.1.v4.1 annot-version=v4.1 ATGGCTTCCTCTAAAGAAACCGATAATAATCCAGACACTCCATCCTCGCCAAAGAAGATATATAAAGACCCAGATGATGGGAGGCAACGGTTTTTGTTGG AATTGGAGTTTGTTCAATGTCTTGCTAACCCTACTTACATCCATTATTTGGCTCAGAATCGTTATTTTGAAGATGAAGCATTTATTGGCTATTTAAAGTA CCTACAGTACTGGCAACGTCCAGAGCACGTGAAATTTATAATGTATCCTCATTGCTTATATTTTCTTGAACTTCTCCAAAATGCAAACTTCCGCAATGCA ATGGCACATCCTGGCAACAAGGAGTTGGCACATAGACAGCAATTCTTTTTCTGGAAGAACTACAGAAACAACCGGTTGAAGCATATCTTACCCAGACCTC TCCCTGAACCTGTCACTGCACCCCCTGCTCTAGCTCCTCCACCTCAAACTCCTGTTCAACCTGTACCACCTGTGTCTGCTGCAACTCTTGGCATGCCGGC TGCTCCTGGTGCAGTCCCCTTGCCCATGCCTCCTGGTTCTGCTTTTGGAAAAAGTGATATCAGGAACAGTGGAAGTGATAGAAGAAAGAGGAAGAAAGAA GTTTAA
AA sequence Show only first row Show all	>Potri.012G113400.1 pacid=42783437 polypeptide=Potri.012G113400.1.p locus=Potri.012G113400 ID=Potri.012G113400.1.v4.1 annot-version=v4.1 MASSKETDNNPDTPSSPKKIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEHVKFIMYPHCLYFLELLQNANFRNA MAHPGNKELAHRQQFFFWKNYRNNRLKHILPRPLPEPVTAPPALAPPPQTPVQPVPPVSAATLGMPAAPGAVPLPMPPGSAFGKSDIRNSGSDRRKRKKE V

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19910		MED31	SOH1 family protein (.1.2)		Potri.012G113400 [exp]	0	1
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.001G150800 [exp]	3.87	0.8701
AT3G27930			unknown protein		Potri.001G348700 [exp]	4.89	0.8859
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.011G163600 [exp]	9.38	0.8212
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.007G012700 [exp]	10.81	0.8548
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.007G110400 [exp]	15.19	0.8663
AT1G15780			unknown protein		Potri.003G013000 [exp]	15.90	0.8518
AT1G19485			Transducin/WD40 repeat-like su...		Potri.006G036601 [exp]	19.44	0.8339
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Potri.013G094800 [exp]	19.89	0.8491
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	21.02	0.8342
AT2G40980			Protein kinase superfamily pro...		Potri.008G083300 [exp]	22.36	0.7911

Compare expression of checked genes

Potri.012G113400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.