Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69940 416 / 1e-145 ATPPME1 Pectin lyase-like superfamily protein (.1) AT5G07410 412 / 4e-144 Pectin lyase-like superfamily protein (.1) AT5G07420 390 / 2e-135 Pectin lyase-like superfamily protein (.1) AT5G61680 388 / 5e-135 Pectin lyase-like superfamily protein (.1) AT5G07430 389 / 6e-135 Pectin lyase-like superfamily protein (.1) AT5G19730 273 / 2e-89 Pectin lyase-like superfamily protein (.1) AT5G55590 245 / 2e-78 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT1G05310 241 / 2e-76 Pectin lyase-like superfamily protein (.1) AT5G47500 238 / 7e-76 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G36710 239 / 1e-75 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G114900 [exp] 753 / 0 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114266 [exp] 753 / 0 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 753 / 0 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 752 / 0 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.006G186100 [exp] 696 / 0 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.006G186000 [exp] 696 / 0 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.015G110700 [exp] 525 / 0 AT1G69940 393 / 2e-136 Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 378 / 2e-130 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 285 / 5e-94 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016711 [exp] 430 / 5e-151 AT1G69940 400 / 4e-139 Pectin lyase-like superfamily protein (.1) Lus10034893 [exp] 353 / 6e-121 AT5G61680 333 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 271 / 3e-89 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 271 / 2e-88 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 271 / 2e-88 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 263 / 2e-85 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 259 / 4e-83 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 256 / 6e-83 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 253 / 3e-81 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 241 / 1e-76 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Potri.012G113533.1 pacid=42783166 polypeptide=Potri.012G113533.1.p locus=Potri.012G113533 ID=Potri.012G113533.1.v4.1 annot-version=v4.1 ATGGGTTCCATTGCAGCTATTCAGTGTGCCCTTACAGCAATTCTTCTTGTTTCCACCACCGTTAGTTCTGATGATAAAAGTCCGATACCTGCCGATCCAT CGAGCCTAAACACATGGTTTCAAGACAATGTCAAGCCCCTGGCAGACCGTAAGGGCACCATAGACCCTGCCCTCGAAGCGGCCGAGGCCAAACCAAGAAC CATCAAGGTTCGACAAGATGGAAGTGGAGAATTCAAAACCTTGAAGGATGCCATTAACAGCATTCCAACAGGGAACACAGAACGAGTGATTGTGGATATT GGACCTGGAGAGTACATTGAAAAACTCAAAATCGAACGTAGCAAACCTTTTGTTACATTCTTGGGATCGCCTAGTAACAAGCCAACCTTGTCATTTGACG GCACGGCAAAAGAATATGGAACTGTTTACAGTGCTACCTTGGAAGCTGAGGCTGATTACTTTGTGGCTGCTAATATCATTTTTAAGAATTCTGCGCCGAG GCCAAATGGGGAATTGAAAGGAGAACAAGCAGTTGCTCTGAGGATTTCTGGGGACAAGTCTGCTTTCTATAACTGCAGATTAATTGGATTTCAAGACACA TTGTGTGATGACAAGGGACGGCATCTCTTCAAGGATTGTTATATTGAAGGCACCGTTGATTACATTTTTGGAAGCGGAAAGTCCTTGTATTTGGGAACAG AGTTACATGTGATTGGTGATGAAAATGGGAATTTCATCACTGCCCATGCAAGAAACAGCGAGGCAGAAGATACTGGATTTTCGTTCGTGCATTGTAAAGT AGATGGCACTGGCGCCAAGGGGGCGTATTTGGGACGAGCATGGCAGGCAAGGCCACGAGTGGTCTTCTCATACACTACCATGAGCAGTGTTGTTAATCCT GAGGGATGGTCCAATAATTTCCACCCTGAACGAGACCAGACTGCTTTATTTGGAGAATACAAGTGCGAGGGGGAAGGAGCTAACCCCGCAGGCCGCGCTA AAGCGACCAAGCAGCTAACACCTGATCAAGCAGCTCCCTTCATTTCTCTTGGCTTCATTGAAGGTTCCAAATGGCTGCTTCATCCTCCAAATTAA
AA sequence Show only first row Show all	>Potri.012G113533.1 pacid=42783166 polypeptide=Potri.012G113533.1.p locus=Potri.012G113533 ID=Potri.012G113533.1.v4.1 annot-version=v4.1 MGSIAAIQCALTAILLVSTTVSSDDKSPIPADPSSLNTWFQDNVKPLADRKGTIDPALEAAEAKPRTIKVRQDGSGEFKTLKDAINSIPTGNTERVIVDI GPGEYIEKLKIERSKPFVTFLGSPSNKPTLSFDGTAKEYGTVYSATLEAEADYFVAANIIFKNSAPRPNGELKGEQAVALRISGDKSAFYNCRLIGFQDT LCDDKGRHLFKDCYIEGTVDYIFGSGKSLYLGTELHVIGDENGNFITAHARNSEAEDTGFSFVHCKVDGTGAKGAYLGRAWQARPRVVFSYTTMSSVVNP EGWSNNFHPERDQTALFGEYKCEGEGANPAGRAKATKQLTPDQAAPFISLGFIEGSKWLLHPPN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G113533 [exp]	0	1
AT5G12380		ANNAT8	annexin 8 (.1)		Potri.001G277500 [exp]	1.00	0.9989
					Potri.018G115550 [exp]	1.41	0.9805
					Potri.002G050150 [exp]	29.06	0.9072
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Potri.006G166100 [exp]	32.86	0.9295
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	56.74	0.9074
					Potri.006G102050 [exp]	95.91	0.9074
AT5G15110			Pectate lyase family protein (...		Potri.017G078400 [exp]	106.16	0.9074
AT3G19080			SWIB complex BAF60b domain-con...		Potri.007G039350 [exp]	107.16	0.7931
AT2G24370			Protein kinase protein with ad...		Potri.018G002400 [exp]	107.23	0.9074
					Potri.001G169351 [exp]	111.44	0.9074

Compare expression of checked genes

Potri.012G113533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.