Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51150 744 / 0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT1G34630 103 / 1e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G111200 [exp] 875 / 0 AT5G51150 767 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.002G096500 [exp] 108 / 4e-25 AT1G34630 667 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043005 [exp] 763 / 0 AT5G51150 780 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032508 [exp] 746 / 0 AT5G51150 775 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10034188 [exp] 103 / 2e-23 AT1G34630 681 / 0.0 unknown protein Lus10043395 [exp] 64 / 1e-10 AT1G34630 374 / 2e-128 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [poplar] [flax] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Potri.012G113700.1 pacid=42783540 polypeptide=Potri.012G113700.1.p locus=Potri.012G113700 ID=Potri.012G113700.1.v4.1 annot-version=v4.1 ATGCCGGCCCTCGCCAAACCACTCTTCTCTCCACCACCACAAATCCACCACGACAATTCCGACGCCGAGCGCCGCCTTCTCGAGGCCGAGGAACGCCTCC GCGAGGCAATAGAAGAACTCCACAGTAGAAACGCCGTGCGTGGTCCTTATCCTCCTTGCGATCACGGGCCTGATGAATCCTGTGCCGCTCATGCCATTGG TAATCTCTGTCAAACCTTCCTTCTCACATACGGTGTTCGTGTCGGCATCGGCATTTTGCTTCGTGCTTTTAAGCTCGCTAAAGGAAAGTCTTACTCTTCT CTCCTCGACCTCAAGCGACTTGTTTCGGAGAAGGATTTAATAGTGAGAGAGGAGTCATGTCGCATTGGGTTACTTTTTGGTGGATTTACTGGATCATATC ATGCACTGAGATGTTTTTTGAGGAAGTTTAGAAGGAAAGAGACGCCATTCAATGCAATTTTAGCAGGTTCGGTTGCAGGGTTGTCTGTTTTAGCATTAGA TGACTCAAACAGGAGGCGTACTCTTGCTCTTTATCTTTTGGCCAGGGTAGCTCAGTGTGCTTATAATTCTGCGAAATCAAAAAACAAGTTTCACTTTTGG GGAAGCCGTTGGAGACACGGAGATTCTTTGCTCTTTTCAATCTCTTGTGCCCAGGTTATGTATGCCTTTATAATGCATCCTGAGAGCTTGCCACAAGCAT ATCAGGACTTCATTCAGAAGACTGGACCAGTTGCAGCTCCTGTATACAAGTCTATAAGAGAGTGCTGTAGATGTGGCCCAGTGGATCTTGCTTCATTATC AGCTTTTTTATCTCGCAGAGGAAAACCTGACTCTGTGAAGTTGGAAGAATTCCCTTCAATTATTCCTTGTTCTGTTATTCATCCAGACACACATTCATGT TTAGCTCAGAATGCTAATGCAGCATCAGCTACGTTCAGGAAAACATTTCCACTTTACTTCTCATTGACTTTTGTACCTTATGTCGTTCTGCAACTGCAGA AGTTCATGGATGCGCCTGCACATACATGTTGGTTTGCTCTTAGAGATGCTGTTCACTCAACGGCATTCTTGTCTGCATTTGTTGGAATTTTTCAGGGGGT GATATGCCTTCATCGAAAAGTAGCAACAAGGGACCACAAGCTTGTATATTGGATTGCAGGTGGAATATCTGCCCTTTCTGTACTACTGGAGAAAAAATCT AGACGTGCTGAACTTGCCTTGTATGTTCTTCCACGGGCTGGAGATTCACTGTGGTATATTTTAGTGAACCGCCACCTGCTTCCAAATATTAGGAATGCTG AGGTGGCCTTATTTTGTGCATGTATGGGAGGAGTTATGTACTACTTGGAACATGAACCAGACACTATGGCTCCATTCTTGAGAGTCCTGATCCGACGCCT CCTTGCTAGTAGAATAAGCAATCCAGTCCTTCCATCTAATCGGGTTCCTTCCTACACATATTTACAGACTCTTGACGCCATCAAGAAGCCAAAATCACAG GAAAGCAGAGAGGATGAAGCCTCACCTTCTCAGAAATATAATCTTGAATCCATTCCAGGGCTGTAA
AA sequence Show only first row Show all	>Potri.012G113700.1 pacid=42783540 polypeptide=Potri.012G113700.1.p locus=Potri.012G113700 ID=Potri.012G113700.1.v4.1 annot-version=v4.1 MPALAKPLFSPPPQIHHDNSDAERRLLEAEERLREAIEELHSRNAVRGPYPPCDHGPDESCAAHAIGNLCQTFLLTYGVRVGIGILLRAFKLAKGKSYSS LLDLKRLVSEKDLIVREESCRIGLLFGGFTGSYHALRCFLRKFRRKETPFNAILAGSVAGLSVLALDDSNRRRTLALYLLARVAQCAYNSAKSKNKFHFW GSRWRHGDSLLFSISCAQVMYAFIMHPESLPQAYQDFIQKTGPVAAPVYKSIRECCRCGPVDLASLSAFLSRRGKPDSVKLEEFPSIIPCSVIHPDTHSC LAQNANAASATFRKTFPLYFSLTFVPYVVLQLQKFMDAPAHTCWFALRDAVHSTAFLSAFVGIFQGVICLHRKVATRDHKLVYWIAGGISALSVLLEKKS RRAELALYVLPRAGDSLWYILVNRHLLPNIRNAEVALFCACMGGVMYYLEHEPDTMAPFLRVLIRRLLASRISNPVLPSNRVPSYTYLQTLDAIKKPKSQ ESREDEASPSQKYNLESIPGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51150			Mitochondrial import inner mem...		Potri.012G113700 [exp]	0	1
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Potri.005G209000 [exp]	4.47	0.8074
AT3G09320			DHHC-type zinc finger family p...		Potri.006G087400 [exp]	7.07	0.7900
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	10.77	0.8215
AT5G15170		TDP1	tyrosyl-DNA phosphodiesterase ...		Potri.004G022500 [exp]	12.96	0.7299
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.001G218100 [exp]	13.19	0.8213
AT3G54190			Transducin/WD40 repeat-like su...		Potri.006G113000 [exp]	18.54	0.7914
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	20.34	0.7641	Pt-ARF1.11
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.002G079200 [exp]	22.58	0.7948
AT5G04420			Galactose oxidase/kelch repeat...		Potri.008G031200 [exp]	25.37	0.7925
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	29.69	0.8190

Compare expression of checked genes

Potri.012G113700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.