Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) AT4G10720 189 / 6e-55 Ankyrin repeat family protein (.1.2) AT1G14480 176 / 6e-50 Ankyrin repeat family protein (.1.2) AT5G54620 173 / 4e-49 Ankyrin repeat family protein (.1) AT5G15500 173 / 8e-49 Ankyrin repeat family protein (.1.2) AT1G14500 168 / 3e-47 Ankyrin repeat family protein (.1) AT5G54610 167 / 5e-47 ANK ankyrin (.1) AT3G12360 108 / 3e-25 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT4G11000 103 / 5e-24 Ankyrin repeat family protein (.1) AT1G07710 102 / 3e-23 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G111300 [exp] 729 / 0 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 272 / 1e-86 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 189 / 1e-54 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.006G223800 [exp] 186 / 2e-53 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.013G017254 [exp] 171 / 2e-48 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 155 / 3e-41 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.018G050600 [exp] 108 / 2e-27 AT5G15500 91 / 1e-21 Ankyrin repeat family protein (.1.2) Potri.016G080700 [exp] 112 / 2e-26 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 110 / 4e-26 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041537 [exp] 429 / 6e-148 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10034256 [exp] 155 / 7e-42 AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1) Lus10037894 [exp] 154 / 8e-41 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10029007 [exp] 140 / 3e-36 AT5G51160 128 / 4e-32 Ankyrin repeat family protein (.1) Lus10034255 [exp] 139 / 5e-36 AT5G51160 125 / 4e-31 Ankyrin repeat family protein (.1) Lus10038609 [exp] 129 / 5e-34 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10029008 [exp] 133 / 6e-34 AT5G51160 121 / 8e-30 Ankyrin repeat family protein (.1) Lus10024844 [exp] 110 / 8e-26 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10029089 [exp] 106 / 1e-25 AT5G51160 104 / 4e-25 Ankyrin repeat family protein (.1) Lus10025289 [exp] 106 / 2e-24 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.012G113800.1 pacid=42784256 polypeptide=Potri.012G113800.1.p locus=Potri.012G113800 ID=Potri.012G113800.1.v4.1 annot-version=v4.1 ATGGATACAAGGCTGTTTGAGGCTGCTCGAACAGGAAACATTGATTATTTGCAGCAGTTGCTGGCAGAAAATCCATTTATCCTCAACAACACACAGTTAT CTGCCGAGAATCCCTTGAACATTGCTGCTGCTATGGGGCACGTTGACTTTGTGAAGGAGATTATAAGGTTGAAACCAGTTTTTGCCATAGAAGTGAATCA AGAAGGCTTTAGTCCTATGCATATAGCTGCAGATAATGGCCAGGTTGAGATTGCGAAGGAGCTAATGGAAGTCGACATCAAACTCTGCCGGTTAGAGGGA AGACAGAAAATGACTCCTTTTCACCATGCTGCTATCAGAGGGAGGGCTGAGGTGATCAGTTTAATGCTTTCAGGTTGTCCTGATTGTATTGAAGATGAGA CTGAACGAAGGGAGAGTGCTTTGCACCTTGCTGTCAGGAATAACAGATTTGAAGCAATAAAGATGCTGGTGGATTGGATCAGAGAAATGAACAAGGAATA CTTGCTGAACATGAAGGATGAGCAAGGGAATACAGTTTTGCACCTTGCAAGCTGGAAAAAACAACGTCGGGTGATAGAAATATTTCTTGGAAGTGGATCT GCAAGTACAGGCTCGTTGGAAGTGAATGCCATTAACCATACTGGCATCACCGCCCTCGACGTGATACTACTTTTCCCAAGCGAAGCAGGGGATAGAGAAA TTGTTGAGATCCTTCGAAGTGCTGGAGCAATGAGAGCAAGAGATACTGTCCCCTCTACTGTTACCAACAGCCAAACCTCTACCGACAACCCCTCAACACC AGAGAGATGCTGGTCAAACCGAGATAACTTGGTAGAATACTTCAAGTTTAAGAAGGATAGGGATTCACCTAGCGAAGCTCGCGGTACACTACTAGTTATA GCGGTTTTGGTTGCAACTGCAACGTTCCAAGTTGGAGTCGGCCCTCCAGGAGGTGTTTGGCAAGATACAAGCATACCTGATCAAAAAAATATTACCAGCA ATAACACTGCACACTTTGCAGGTCAGTCCATTATGGCTACCACAAACACAGTTGGTTTTATGCTATTTGTGTTTTTCAACTCAGTTGGATTTTCCATGTC TCTTTACATGCTCTATGTCCTCACAAGTAAATTCCCCTTGCAATTTGAGCTTCAAATATGCCTGCTTGCTATGTATTGTACTTATGGCACTGCATTATCA TGCATTGTGCCATCCAACCTCTACCTATTTGTTCAGTTAACCACAACAATATTGTCATCAACTATGTCTGCTTTGGCTCGATCTGTACGCCCACTTACAA GAATGCTCAGAAAATCTTTCAAGGACTTCACTCATAGAGTTGTCTGA
AA sequence Show only first row Show all	>Potri.012G113800.1 pacid=42784256 polypeptide=Potri.012G113800.1.p locus=Potri.012G113800 ID=Potri.012G113800.1.v4.1 annot-version=v4.1 MDTRLFEAARTGNIDYLQQLLAENPFILNNTQLSAENPLNIAAAMGHVDFVKEIIRLKPVFAIEVNQEGFSPMHIAADNGQVEIAKELMEVDIKLCRLEG RQKMTPFHHAAIRGRAEVISLMLSGCPDCIEDETERRESALHLAVRNNRFEAIKMLVDWIREMNKEYLLNMKDEQGNTVLHLASWKKQRRVIEIFLGSGS ASTGSLEVNAINHTGITALDVILLFPSEAGDREIVEILRSAGAMRARDTVPSTVTNSQTSTDNPSTPERCWSNRDNLVEYFKFKKDRDSPSEARGTLLVI AVLVATATFQVGVGPPGGVWQDTSIPDQKNITSNNTAHFAGQSIMATTNTVGFMLFVFFNSVGFSMSLYMLYVLTSKFPLQFELQICLLAMYCTYGTALS CIVPSNLYLFVQLTTTILSSTMSALARSVRPLTRMLRKSFKDFTHRVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51160			Ankyrin repeat family protein ...		Potri.012G113800 [exp]	0	1
AT1G16260			Wall-associated kinase family ...		Potri.003G186100 [exp]	1.41	0.9753
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010700 [exp]	2.44	0.9709
AT2G31090			unknown protein		Potri.011G063900 [exp]	3.46	0.9633
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.015G020000 [exp]	4.00	0.9680	NAC021
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102700 [exp]	5.29	0.9624
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.014G131800 [exp]	5.47	0.9699
AT3G06240			F-box family protein (.1)		Potri.001G318400 [exp]	6.32	0.9518
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120300 [exp]	7.07	0.9607
AT1G52780			Protein of unknown function (D...		Potri.006G187000 [exp]	7.48	0.9618
AT5G50200		WR3, ATNRT3.1, ...	WOUND-RESPONSIVE 3, NITRATE TR...		Potri.015G085000 [exp]	8.24	0.9391	WR3.3

Compare expression of checked genes

Potri.012G113800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.