Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25120 1330 / 0 ATSRS2 ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016712 [exp] 1378 / 0 AT4G25120 1282 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036008 [exp] 189 / 2e-52 AT4G25120 166 / 7e-45 ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13245 [poplar] [flax] AAA_19 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13538 [poplar] [flax] UvrD_C_2 UvrD-like helicase C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G114100.1 pacid=42782927 polypeptide=Potri.012G114100.1.p locus=Potri.012G114100 ID=Potri.012G114100.1.v4.1 annot-version=v4.1 ATGTCAAAAGAAAACAGTTGCGCGTTAGCCAAAATCATAACGGAAGAACAAAGAGCTCGAATTTCTCACAATTTCAAAGCCGCAAAAGCACTCCTCGCTC GCAAACGCCCTCTCGACTCCATCTCCGCCGCAACCGCTAATAAATTCCCTCACAAAAATGATGATGTAATCTCACTTAAGTCACCAAGATTTCCTCTCGC GGAGGTGAATACTAACCTGCCGCCATCGCGGTTAGTACAAAAAGGTGTCACGCGAGTGTCGGAGTTGGTTAATGGTAGTGATGGAGAGAGTAAATGTTTA TCGGAATCTTTTGTTACTCCGGTGAAAAAACCGGAAGGTTCGGGTTTTAGTGACTGTTTATCTACGCTTAGTAGCAGTGCTAGTATTTTAGATGATGATG ATTTTAATGAGTCTATTTTGGAGGAGATTGATGCGATTTGTGAGCAGAAGTCTGTTGTGAAAGTGGAAAAGGAAAGTCCGAATAGGAGTTTTAGTGTAGA ATGTGAGTGTGATCAGGGAAATGAGGGCAGTTTGGCTAGTTTGGAGTCAGGTATGCGAGATGTGTTGGACTCTCCAACGGAAGAGAAAAGTATTTGTCCA TGCGGAAATATGCCTGAAGAGTATGTGAAGTATTTGCAGGGTCTGAATGATAGGCAGCGTGAAGCGGCTTGTAGTGATATTTCGGTCCCTTTGATGCTTA TTGCTGGTCCAGGTAGTGGAAAGACTTCTACAATGGTCGGGCGTGTTTTGATGCTGCTCAATGAGGGAATTAGTCCATCAAACATTCTGGCAATGACTTT CACAACTGCTGCAGCTGCTGAGATGAGAGATCGGATTGGAGCAGTGGCTGGGAAGGCAAAAGCTAAAGAGCTTATGATTAGCACGTTCCATTCCTTTTCT TTGCAACTTTGTCGTTCACATGCAGAGAAGTTAGGCCGCACATCAGAATTCTTGATATATGGACATGGGCATCAGAGAAGAGCAATCATTGAGGCCGTGA GGCTATTAGAAAAGGAAAAGAGTGGTGTACAAAATGACGATGCCAGCAAACTTGCTCAAGATTCTAAAGATGTAGTGTCTCTGGAATATTTCAAGGACAA GTCAAAGAAATGGCAAAAGTTTGTGACTCAGGCTAAAGCTTCTGGAAAAACACCCGCAGACTTCCATAGAAGGGGTGATGAAATTGGAGCAGCAATTCTT GGGAACTACAATGACATATTAAGATCTTGTAATGCTTTGGACTACCATGACTTGATCAGTTGTTCTGTGAAGTTGCTTACTGATTTTCCTGAAGTATTTG AGGATTGCAAAGATTCATGGAAAGCCATTGTGATAGATGAGTTCCAGGACACAAGTGCCATGCAATACAGTCTTTTACGACTTCTTTCATCTCATAATCA TATAACTATTGTTGGTGATGATGATCAGTCCATTTTCAGTTTCAATGGAGCTGAAATTTCTGGGTTTGACTCATTTCGTCATGATTTTGCAAATTACAAA GAGATTAGACTCAATAAAAACTATCGATCCACCCGCTATATTGTTGAAGCTGCATCTTCTCTTATTCAAAATAACATGAAAAGATGCCAGTTCAAGGATG TTCTTACTGATAATTCTTGTGGATCTAAGATAGCTATCAAGGAATGTCAAAATGAACGTGCAGAATGTGCATTTGTTGTTGACAAGATCTTGGAGGCTGC ATCTGATGGCTCACATTCTAAGCCTTCTTATGGCAGTATTGCCATTCTGTATAGGAGGCAGGTATCAGGAAAGATATTTCAATTAGCATTTCGTGAGAGG AAAATACCATTCAATGTTCACGGGGTTGCTTTTTATAGGAAAAAGGTAGTTAAAGCTATCATTGCAATGCTTAGAACAACATTGCCAGGTTGTGACGATG GTTCATATCATCAAGTTTTCAAGGCTTTGCTTCCTTTCGAGAAGGAGGAGAAGAGGAGGGTTATCGAGCATGTTGATAAAATCTCAACGGTTCGAAAATG TAGCTTTATAGCTGCTGCATGTGATGTCTTTAGTGCAAAGATTTCTGGTACCTTCAAGAGGAGTCAGCTCACACAGGGACGTAAGGTGTTGTCTACACTA CAGATGATTTCCAAACTTGTTCACAGGGAACAGTCAATTTCAGCTGTCATAACTTCAGTGGCGAACATGGTTCCTCAGAAATATCTCCTCGAACAACGGG CAGTGGTTGATAGTGATGGAGGAAAGTGGCTCAATGAAGACAGTGACCTCAGATCTGTTCTTCAGTATTTATTGGACGATGTCTCTGATGTTTTATCTAT GCAAGTTGCTTCAAAAGAAGGAGAGAGTGATGTACAAGAACAGAAAGGTTGTGTTAGTTTACTCAAAGAGTTTATTGACTACATAACAGAGCGGGAGAAA GAAAATTTTCGTTCTCGAAGACATAATAATGAAAATTCTGTAACCCTGACTACCATTCATCAGTCAAAAGGCTTAGAGTGGGACACTGTTTTTATAGTAA AGGCAAATGAATCTGAGATTCCTCTGTTGCATGAATTTAATGGCAGTGCAAAGGAAAATGGGAACTCAATTGAGGAAGAGCGGCGTCTTTTCTATGTGGC AATGACTCGTGCTCGAAAGAAACTTTTCATTACATATGTTGCCATGGATTCAAATTGGCAGATGCTTCATCCATCACGTTTTCTCAAAGAGATACCGGAT CATCTTCGGGAGATTCAGGCTGAAGTATGTCTACAAGATTTACAAACAAAGCATCGCGAGATCCGAAATGAAACTGTTGACTTTGTCATTGATCTACCAA AAGAACAAAAATTTTCTGATTTAGAAACAGAGTCAAATGATTTCCTCGTTAATCAAATAAACGAGGCTTCAAAAGAGTCATTGGAAACAATTGATTCATA CAATGGGAATATTTTCTTAAGGAGATTTGCTGTTGAGGAAAGGTCAGTTATTTCCCACTTATTCCATCAATGGGCCAAGAAACAAGCATTCCAAAACCCT AAGAGATTGCTTAATAAGGTTGGATTTGTTATTGATGAACGATTGAGAGTCGAGAAGAACAAACACAAGGATGTTTTGCGTGCATTGAAATCCTGCTTGA GCTGTGATGAGGCCTTTCAGTATGCAGAATATGTGCTGAGATGGGAGCAAATTCCTGCCGACCAACGTGCTCATTTGATGCATGAGAAACAGGAGCATTT CCAGAAATTAAGGATAGAGAATTCAATGAGCTCATCTGCACCCACATCTAAACAGATTGGATATCTTCAAAACTTGGGATGCACCGTGACCCCTACATCA CGTCTCCATGCTTCCCGCTTGATAGAGCAATATAAATCATTATGA
AA sequence Show only first row Show all	>Potri.012G114100.1 pacid=42782927 polypeptide=Potri.012G114100.1.p locus=Potri.012G114100 ID=Potri.012G114100.1.v4.1 annot-version=v4.1 MSKENSCALAKIITEEQRARISHNFKAAKALLARKRPLDSISAATANKFPHKNDDVISLKSPRFPLAEVNTNLPPSRLVQKGVTRVSELVNGSDGESKCL SESFVTPVKKPEGSGFSDCLSTLSSSASILDDDDFNESILEEIDAICEQKSVVKVEKESPNRSFSVECECDQGNEGSLASLESGMRDVLDSPTEEKSICP CGNMPEEYVKYLQGLNDRQREAACSDISVPLMLIAGPGSGKTSTMVGRVLMLLNEGISPSNILAMTFTTAAAAEMRDRIGAVAGKAKAKELMISTFHSFS LQLCRSHAEKLGRTSEFLIYGHGHQRRAIIEAVRLLEKEKSGVQNDDASKLAQDSKDVVSLEYFKDKSKKWQKFVTQAKASGKTPADFHRRGDEIGAAIL GNYNDILRSCNALDYHDLISCSVKLLTDFPEVFEDCKDSWKAIVIDEFQDTSAMQYSLLRLLSSHNHITIVGDDDQSIFSFNGAEISGFDSFRHDFANYK EIRLNKNYRSTRYIVEAASSLIQNNMKRCQFKDVLTDNSCGSKIAIKECQNERAECAFVVDKILEAASDGSHSKPSYGSIAILYRRQVSGKIFQLAFRER KIPFNVHGVAFYRKKVVKAIIAMLRTTLPGCDDGSYHQVFKALLPFEKEEKRRVIEHVDKISTVRKCSFIAAACDVFSAKISGTFKRSQLTQGRKVLSTL QMISKLVHREQSISAVITSVANMVPQKYLLEQRAVVDSDGGKWLNEDSDLRSVLQYLLDDVSDVLSMQVASKEGESDVQEQKGCVSLLKEFIDYITEREK ENFRSRRHNNENSVTLTTIHQSKGLEWDTVFIVKANESEIPLLHEFNGSAKENGNSIEEERRLFYVAMTRARKKLFITYVAMDSNWQMLHPSRFLKEIPD HLREIQAEVCLQDLQTKHREIRNETVDFVIDLPKEQKFSDLETESNDFLVNQINEASKESLETIDSYNGNIFLRRFAVEERSVISHLFHQWAKKQAFQNP KRLLNKVGFVIDERLRVEKNKHKDVLRALKSCLSCDEAFQYAEYVLRWEQIPADQRAHLMHEKQEHFQKLRIENSMSSSAPTSKQIGYLQNLGCTVTPTS RLHASRLIEQYKSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.012G114100 [exp]	0	1
AT1G03180			unknown protein		Potri.005G208700 [exp]	5.83	0.9661
AT4G30130			Protein of unknown function (D...		Potri.018G147749 [exp]	7.21	0.9574
AT2G38890			unknown protein		Potri.008G044500 [exp]	8.66	0.9549
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053100 [exp]	11.83	0.8362
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	12.32	0.9194
AT3G58480			calmodulin-binding family prot...		Potri.006G197500 [exp]	12.84	0.9536
AT4G14805			Bifunctional inhibitor/lipid-t...		Potri.010G085000 [exp]	13.71	0.9538
AT5G07900			Mitochondrial transcription te...		Potri.001G034900 [exp]	16.70	0.8786
AT2G31690			alpha/beta-Hydrolases superfam...		Potri.014G150700 [exp]	18.00	0.9507
AT3G01980			NAD(P)-binding Rossmann-fold s...		Potri.017G067332 [exp]	18.65	0.8843

Compare expression of checked genes

Potri.012G114100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.