Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61670 380 / 3e-133 unknown protein AT5G06130 284 / 5e-95 chaperone protein dnaJ-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G210500 [exp] 303 / 1e-102 AT5G06130 401 / 2e-141 chaperone protein dnaJ-related (.1.2) Potri.001G009800 [exp] 41 / 0.0005 AT2G34860 201 / 6e-66 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016713 [exp] 352 / 1e-121 AT5G61670 447 / 2e-159 unknown protein Lus10016993 [exp] 280 / 2e-93 AT5G06130 404 / 4e-142 chaperone protein dnaJ-related (.1.2) Lus10022688 [exp] 272 / 2e-90 AT5G06130 388 / 4e-136 chaperone protein dnaJ-related (.1.2) Lus10021316 [exp] 236 / 1e-76 AT5G06130 348 / 3e-122 chaperone protein dnaJ-related (.1.2) Lus10014223 [exp] 213 / 6e-69 AT5G06130 295 / 1e-102 chaperone protein dnaJ-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G114200.1 pacid=42783797 polypeptide=Potri.012G114200.1.p locus=Potri.012G114200 ID=Potri.012G114200.1.v4.1 annot-version=v4.1 ATGGCTTGTTTGAGTCGGGTTTTAACGGTTTCTTGCCCGGTAAAACCGTTGTATGGGTTCAGTGCTTGCAGTTCTCAAAATTGGAGGAGTAGATTTGCAG ATGCTTCTAATCATAAATTGAATTTGAGATGGAAAGCTATGGCTTCAGAATCAGATTCTTCTTCTTTCGCTGCTTCAGTTGACTCTGATTCTCCTGATAG AAACGCTACCGGGTTTTGTATCATAGAAGGGCCAGAAACAGTGCAGGATTTTGCTAAAATGGAATTGCTAGAGATTCAAGATAATATTCGAAGTCGGAGG AATAAAATTTTCTTGCACATGGAAGAGGTTCGTAGACTAAGGATACAACAGAGGATCAAGAATGCAGAACTTGGAATTTCAAACGAAAGCGAAGAGAATG AACTTCCCAACTTTCCATCGTTCATTCCGTTCTTGCCTCCTTTGAGTGCTGAAAATTTGAGACTGTATTATGCTACTTGTTTTTCTCTTATTGCTGGGAT TATCATTTTTGGCGGCCTTCTAGCACCCGCGTTGGAGCTTAAGCTCGGTTTGGGGGGCACATCGTATCCAGATTTTATCCGTACTATGCATCTGCCCATG CAGTTGAGTCAGGTTGATCCTATAGTGGCATCATTCTCTGGCGGAGCAGTTGGGGTCATCTCAGCCTTGATGGTGGTTGAGATAAACAATGTAAAGCAAC AAGAGCATAAAAGATGCAAATACTGTCTTGGAACTGGCTATCTTGCTTGTGCTCGGTGCTCAAACACAGGAGCTCTTGTTCTTATCGAACCAGTTTCAAC AATCAGTGGTGCAGATCAGCCTCTATCAAGACCTAAAACGGAAAGATGTTCAAATTGTTCAGGATCTGGAAAGGTCATGTGTCCCACATGCCTTTGCACT GGGATGGCTATGGCAAGTGAACACGACCCACGGATTGATCCATTTGACTAG
AA sequence Show only first row Show all	>Potri.012G114200.1 pacid=42783797 polypeptide=Potri.012G114200.1.p locus=Potri.012G114200 ID=Potri.012G114200.1.v4.1 annot-version=v4.1 MACLSRVLTVSCPVKPLYGFSACSSQNWRSRFADASNHKLNLRWKAMASESDSSSFAASVDSDSPDRNATGFCIIEGPETVQDFAKMELLEIQDNIRSRR NKIFLHMEEVRRLRIQQRIKNAELGISNESEENELPNFPSFIPFLPPLSAENLRLYYATCFSLIAGIIIFGGLLAPALELKLGLGGTSYPDFIRTMHLPM QLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRCKYCLGTGYLACARCSNTGALVLIEPVSTISGADQPLSRPKTERCSNCSGSGKVMCPTCLCT GMAMASEHDPRIDPFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61670			unknown protein		Potri.012G114200 [exp]	0	1
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Potri.011G138900 [exp]	2.44	0.9258
AT4G32590			2Fe-2S ferredoxin-like superfa...		Potri.006G247300 [exp]	7.48	0.9028
AT2G36895			unknown protein		Potri.016G099300 [exp]	9.59	0.9108
AT2G39730		RCA	rubisco activase (.1.2.3)		Potri.010G200500 [exp]	12.12	0.9157
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Potri.019G053200 [exp]	14.49	0.8415	ZFN3.2
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G109700 [exp]	16.91	0.9159	Pt-ALDH11.1
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Potri.019G031900 [exp]	24.00	0.8433
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Potri.004G100000 [exp]	24.10	0.9031
AT1G50320		ATHX, ATX	thioredoxin X (.1)		Potri.007G074000 [exp]	27.47	0.9101
AT3G05170			Phosphoglycerate mutase family...		Potri.003G131200 [exp]	30.01	0.8604

Compare expression of checked genes

Potri.012G114200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.