Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP728F1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36110 295 / 7e-95 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) AT2G42850 291 / 4e-93 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT5G05690 246 / 1e-75 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT5G45340 243 / 6e-75 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G19270 240 / 1e-73 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT1G12740 238 / 5e-73 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT4G19230 237 / 1e-72 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 228 / 1e-68 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT3G50660 223 / 1e-66 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT1G19630 210 / 4e-62 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057901 [exp] 525 / 0 AT5G36110 279 / 2e-88 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017800 [exp] 389 / 4e-131 AT5G36110 317 / 1e-103 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G001500 [exp] 383 / 6e-129 AT5G36110 331 / 8e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G001300 [exp] 382 / 9e-129 AT5G36110 332 / 2e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017633 [exp] 356 / 1e-118 AT5G36110 301 / 3e-97 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017700 [exp] 356 / 2e-118 AT5G36110 304 / 2e-98 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.006G085500 [exp] 330 / 3e-108 AT5G36110 573 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G149300 [exp] 324 / 6e-106 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.007G002400 [exp] 320 / 4e-104 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040055 [exp] 383 / 9e-129 AT5G36110 318 / 7e-104 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Lus10010940 [exp] 310 / 5e-100 AT2G42850 571 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Lus10035685 [exp] 247 / 4e-76 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10028594 [exp] 241 / 1e-73 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10018898 [exp] 236 / 7e-72 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 235 / 1e-71 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10024495 [exp] 233 / 1e-70 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10033308 [exp] 230 / 1e-69 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10021725 [exp] 229 / 1e-69 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10012675 [exp] 228 / 7e-69 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.012G115000.1 pacid=42783919 polypeptide=Potri.012G115000.1.p locus=Potri.012G115000 ID=Potri.012G115000.1.v4.1 annot-version=v4.1 ATGGAAGCAGTATTTGGCCTAGATAAGCTCTCTTCTACAACTGTAATTAGTCTAGCCACCCTGACAACCCTTGTGGCAGTGATATGGACCTATAGATTCT CACTAATACAGAGGAAGAAGCTTCCTCCTGGGAAATTAGGACTTCCTTTCATTGGAGAGTCAATAAGCTTCTTTCGAGCCCACAAGCACAACAACATTGG TAAATGGATTGAAGAGCGTACTATCAAGTATGGACCAGTATTCAAGACATCACTCATGGGTGAAAACGTGGTAGTCATGACTGGTGAAGCTAGTCATAGG TTCATATTTAGCGGCCGCGATAATGGGATTGCTGCCAAGCTAGCAACTTCTGCATTGGCCATACTAGGAAAGAACAACATCTTCGATCTTTATGGATCTC CACATAAGCTTGTTAGAAGTGCTATAATGAGCTTCTTAAATTCTGAGTGCATCCAAAGATATGTTAGCAAGATGGATTCTTTGGTGAAGGAACAAGTATT GCAGGAGCTAAATGACAAAGAGACTGTGCAAGTAGTACTACTGATGAAGAAGATTAGTTTCATTGCTACGGCGAGTCTGCTTTTTGGATTACCAGAAGCG AAGGAAAGAGATGGATTGTTCAAGGACTTTACAATTGCTGTTAAAGGTATGTGGTCAATTCCTCTGAATCTTCCAGGGAGTACCTTTCGAAAAGCAGTCC AGGCTCGAGGCAGGATTTTCAAGCTGTTTACTAATCTGATCGCGGAAAGAAAGAGAGGATTGGAAGATGGAAGCATGGGTTCTCATGATGATGTTATCCT GTGCTTGCTTAGTCTGAGAGATGAAAATGGAAAAACCTTGCCAGATGAGGAGATCATCAACAATCTCATTGCTCTAATGATGGCAAGCCATGATACCACT TCAGTTCTTCTAAGCCTTATTGTCAGGGAACTAGCTAAAAATGCCAGTGTTTACGACAAGGTGCTTGAAGAGCAAAATGAAATTGCTAAAGTCAGATCAA TTGCAAGTGATGGGCAGCTTGGCTGGAGAGAAATCCAGAAGATGAGGTACACATGGAATGTGGCTCAAGAGCTCATGAGATTAACACCTCCAATCATTGG CAACTTCAGGCATGCTTGGAGAGACACCACTTTCAACGGCTATGATATCCCCAAAGGATGGCAGGTGTTCTGGTTAGCTACTAGCACACATTTGGACAAT AAAGTTTTTGAAGACCCAGTAAAGTTCAATCCATCACGATTCGACACGAACTCAAAGTCATCAGTTCCTCCATACACCTATATTCCTTTCGGAGCAGGGC CGAGAGTTTGCCCTGGTGCGGAATTTGCTCGAACCGAAGTGTTATTGATAATTCATCATCTGATAACAAACTACAAATGGACTGCAATGGTTGAAGACGA GATAGTCGTACGTGACCCCATGCCCTTCCCAAACAAGGGCCTTCCAGTCAAGATTTATCCCAAGCACAACATATAG
AA sequence Show only first row Show all	>Potri.012G115000.1 pacid=42783919 polypeptide=Potri.012G115000.1.p locus=Potri.012G115000 ID=Potri.012G115000.1.v4.1 annot-version=v4.1 MEAVFGLDKLSSTTVISLATLTTLVAVIWTYRFSLIQRKKLPPGKLGLPFIGESISFFRAHKHNNIGKWIEERTIKYGPVFKTSLMGENVVVMTGEASHR FIFSGRDNGIAAKLATSALAILGKNNIFDLYGSPHKLVRSAIMSFLNSECIQRYVSKMDSLVKEQVLQELNDKETVQVVLLMKKISFIATASLLFGLPEA KERDGLFKDFTIAVKGMWSIPLNLPGSTFRKAVQARGRIFKLFTNLIAERKRGLEDGSMGSHDDVILCLLSLRDENGKTLPDEEIINNLIALMMASHDTT SVLLSLIVRELAKNASVYDKVLEEQNEIAKVRSIASDGQLGWREIQKMRYTWNVAQELMRLTPPIIGNFRHAWRDTTFNGYDIPKGWQVFWLATSTHLDN KVFEDPVKFNPSRFDTNSKSSVPPYTYIPFGAGPRVCPGAEFARTEVLLIIHHLITNYKWTAMVEDEIVVRDPMPFPNKGLPVKIYPKHNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.012G115000 [exp]	0	1	CYP728F1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139200 [exp]	1.73	0.9991
					Potri.002G158700 [exp]	2.82	0.9990
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.001G113700 [exp]	4.00	0.9980
AT1G59740			Major facilitator superfamily ...		Potri.005G001400 [exp]	5.00	0.9990
AT2G39518			Uncharacterised protein family...		Potri.012G040100 [exp]	5.47	0.9989
					Potri.019G100100 [exp]	5.74	0.9986
AT3G54040			PAR1 protein (.1)		Potri.009G039900 [exp]	6.00	0.9987
					Potri.005G059400 [exp]	6.32	0.9987
AT3G54040			PAR1 protein (.1)		Potri.009G039950 [exp]	7.93	0.9978
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G076100 [exp]	9.79	0.9983

Compare expression of checked genes

Potri.012G115000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.