Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65260 273 / 2e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G51120 266 / 1e-90 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT5G10350 263 / 4e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G12640 70 / 9e-14 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G16940 59 / 5e-10 Splicing factor, CC1-like (.1.2.3) AT3G55460 55 / 6e-09 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT2G36660 54 / 2e-08 PAB7 poly(A) binding protein 7 (.1) AT3G10400 52 / 6e-08 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT2G35410 51 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G74230 51 / 1e-07 GR-RBP5 glycine-rich RNA-binding protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110800 [exp] 390 / 1e-139 AT5G51120 266 / 1e-90 polyadenylate-binding protein 1 (.1.2.3) Potri.005G073200 [exp] 286 / 9e-99 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.007G095800 [exp] 281 / 5e-97 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.017G051600 [exp] 257 / 2e-87 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G311600 [exp] 234 / 2e-78 AT5G65260 238 / 2e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G145050 [exp] 82 / 2e-19 AT2G24350 107 / 4e-27 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G269200 [exp] 71 / 3e-14 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G063800 [exp] 71 / 7e-14 AT3G12640 418 / 6e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G177000 [exp] 61 / 2e-10 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043008 [exp] 327 / 5e-115 AT5G65260 278 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032509 [exp] 336 / 2e-112 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10032510 [exp] 317 / 9e-111 AT5G65260 278 / 2e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009323 [exp] 248 / 4e-84 AT5G65260 268 / 2e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015840 [exp] 244 / 1e-82 AT5G65260 261 / 9e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037701 [exp] 79 / 1e-16 AT3G12640 412 / 2e-135 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015696 [exp] 78 / 2e-16 AT3G12640 417 / 1e-136 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025075 [exp] 61 / 9e-11 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10034466 [exp] 61 / 1e-10 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10018277 [exp] 57 / 3e-09 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.012G115100.1 pacid=42783908 polypeptide=Potri.012G115100.1.p locus=Potri.012G115100 ID=Potri.012G115100.1.v4.1 annot-version=v4.1 ATGGATCACCTTCACGATCACGAAGAGGACGAGCACGAGCACGAGGTCTACGGAGGAGAAATCCCTGATGAAGGAGAGATGGATGCCGATGTTGACATGT CGTCTAGAGCTGAAGAAGATGAGTACCAAGACCCTAACTCCAAGGATTTAGAGGATATGAAGAAAAGATTGAAAGAGATCGAAGAAGAAGCCGGTGCACT ACGTGAAATGCAGGCTAAGGTTGAGAAAGAGATGGGAGCTGTTCAAGATTCTCCTGGTGCTTCTGCTACTCAAGCTGAAAAGGAGGAGGTGGATTCCCGA TCCATTTATGTTGGTAATGTGGATTATTCTTGTACCCCTGAAGAAGTGCAGCAGCATTTTCAGTCCTGTGGAACTGTGAATAGAGTGACTATTTTGACTG ACAAGTTTGGTCAACCAAAGGGATTTGCTTACGTTGAGTTTGTAGAGGTTGATGCTATTCAGAATGCTCTCTTATTAAATGAATCAGAACTTCATGGCCG CCAGTTAAAGGTCTCTGCGAAGCGAACCAATGTTCCTGGAATGAAGCAATTTCGAGGAAGGCGCCCAAGCCCTTATGGGCTCAGGTCCCGGAGGCCATTC ATGCCAGCTCCCTTCTATCCTGCATATGGTTATGGAAGGGTTCCGAGGTTCAGGAGACCTATGCGATACAGGCCATACTAG
AA sequence Show only first row Show all	>Potri.012G115100.1 pacid=42783908 polypeptide=Potri.012G115100.1.p locus=Potri.012G115100 ID=Potri.012G115100.1.v4.1 annot-version=v4.1 MDHLHDHEEDEHEHEVYGGEIPDEGEMDADVDMSSRAEEDEYQDPNSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSPGASATQAEKEEVDSR SIYVGNVDYSCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQFRGRRPSPYGLRSRRPF MPAPFYPAYGYGRVPRFRRPMRYRPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Potri.012G115100 [exp]	0	1
AT1G08580			unknown protein		Potri.019G049300 [exp]	8.24	0.7127
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Potri.018G066500 [exp]	15.74	0.6586
AT3G51500			unknown protein		Potri.011G146400 [exp]	22.89	0.6841
AT3G54130			Josephin family protein (.1)		Potri.016G110300 [exp]	23.81	0.6592
AT5G64160			unknown protein		Potri.003G023601 [exp]	27.74	0.6514
AT4G39630			unknown protein		Potri.007G085100 [exp]	34.38	0.6617
					Potri.013G057832 [exp]	37.48	0.6643
AT3G12290			Amino acid dehydrogenase famil...		Potri.011G098600 [exp]	61.33	0.6465
AT3G07170			Sterile alpha motif (SAM) doma...		Potri.002G244700 [exp]	65.23	0.6334
AT3G58090			Disease resistance-responsive ...		Potri.006G216000 [exp]	80.19	0.6366

Compare expression of checked genes

Potri.012G115100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.