Plant FIBer expression Database

Potri.012G115400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G111756
[exp]
62 / 3e-12 AT5G61660 53 / 6e-09 glycine-rich protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G115400.1 pacid=42784212 polypeptide=Potri.012G115400.1.p locus=Potri.012G115400 ID=Potri.012G115400.1.v4.1 annot-version=v4.1
ATGCAGCCCAATTTATCTCGTTTCACTCTGTTTCTTCTTTTCTTGATCGCCGGAGGCTCTTTTGCCCGTAATATTGGTGGTACGTCCAACAGGGTGGTTG
TAGGGGACATGAAATTTGCCTCTCCTGAGATGTCTACAGTGCCTGTTGGACAGACTGGTCCCCCTTCAGGAGCTAGTGGTTCGGGCCATGGGCCTAACTG
GGATTATAATTGGGGATGGGGTTCGACTCCAAATGGCGGATGGGGTTATGGGTCTGGTTCAGGTCGGTCCCCGACTGGGTTCGGTAAGGGTTTTGGGTAT
GGGTCAGGCTCTGGAAGCGGGTCAGGCTCAGGATATGGTTACGGGACTGGGAGTGGTGGTGCTCAAGGTGGTGGATATGGTGCTGGAAGTGGGTCTGGTA
ATTCTGCTGGTGGTGGCAGCGGGGAAGGAAGTGGTGGACCGAGTAACTATGGAACACAATCACCATCTGACCCTCGACAGAGAACCAACCATGGGTGA
AA sequence
>Potri.012G115400.1 pacid=42784212 polypeptide=Potri.012G115400.1.p locus=Potri.012G115400 ID=Potri.012G115400.1.v4.1 annot-version=v4.1
MQPNLSRFTLFLLFLIAGGSFARNIGGTSNRVVVGDMKFASPEMSTVPVGQTGPPSGASGSGHGPNWDYNWGWGSTPNGGWGYGSGSGRSPTGFGKGFGY
GSGSGSGSGSGYGYGTGSGGAQGGGYGAGSGSGNSAGGGSGEGSGGPSNYGTQSPSDPRQRTNHG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G115400
[exp]
0 1
AT3G63240 DNAse I-like superfamily prote... Potri.005G212700
[exp]
7.21 0.8386
AT5G09520 PELPK2 Pro-Glu-Leu|Ile|Val-Pro-Lys 2,... Potri.018G146200
[exp]
7.74 0.8095
AT1G02460 Pectin lyase-like superfamily ... Potri.005G005500
[exp]
16.52 0.7836
AT1G07645 ATDSI-1VOC dessication-induced 1VOC super... Potri.001G237500
[exp]
18.30 0.8234
AT2G42560 late embryogenesis abundant do... Potri.019G090300
[exp]
19.79 0.8302
AT4G33980 unknown protein Potri.004G140701
[exp]
24.97 0.6516
AT4G17030 ATHEXPBETA3.1, ... expansin-like B1 (.1) Potri.003G083200
[exp]
27.23 0.8095 PtrEXLB1,EXLB1.1
AT4G03540 Uncharacterised protein family... Potri.004G043300
[exp]
28.84 0.8069
AT1G56600 ATGOLS2 galactinol synthase 2 (.1) Potri.013G005800
[exp]
29.66 0.7927
AT5G38760 Late embryogenesis abundant pr... Potri.004G107900
[exp]
30.44 0.8064

Potri.012G115400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.