Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35160 173 / 2e-46 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G47160 152 / 1e-40 YDG/SRA domain-containing protein (.1) AT2G22740 155 / 4e-40 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G47150 145 / 5e-39 YDG/SRA domain-containing protein (.1) AT5G13960 135 / 1e-33 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT5G04940 120 / 1e-28 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 117 / 1e-27 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT4G13460 116 / 3e-27 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 111 / 8e-26 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT2G24740 109 / 7e-25 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G111884 [exp] 449 / 2e-155 AT2G35160 167 / 3e-45 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.003G083100 [exp] 179 / 3e-48 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.002G237950 [exp] 127 / 8e-31 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.010G064300 [exp] 126 / 1e-30 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.014G143900 [exp] 125 / 2e-30 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.008G173100 [exp] 125 / 3e-30 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.001G036800 [exp] 122 / 2e-29 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 122 / 3e-29 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 117 / 1e-27 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032528 [exp] 177 / 9e-50 AT2G35160 218 / 2e-63 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10043211 [exp] 167 / 2e-46 AT2G35160 192 / 3e-54 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 156 / 3e-40 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10003017 [exp] 152 / 1e-39 AT2G35160 251 / 1e-73 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 152 / 5e-39 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011049 [exp] 149 / 2e-38 AT2G22740 255 / 4e-75 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) Lus10041515 [exp] 132 / 2e-32 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 127 / 1e-30 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10040150 [exp] 124 / 7e-30 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10008681 [exp] 121 / 7e-29 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Potri.012G115500.2 pacid=42783554 polypeptide=Potri.012G115500.2.p locus=Potri.012G115500 ID=Potri.012G115500.2.v4.1 annot-version=v4.1 ATGTCTTCCGAGTGCAGATCTACATGGAGCTGCAATTCTAGAACTTCTACTCAATGTTTGTTGAAGTCTAAGCACAGAAGAGTAGATGCGACTTGTGAAT TTCCCAGAGGGTGTGGAAGATTTCCAGTTGTGATGGACTCAAGTGATTCTGAAGATGGCATTGGTGATCATTCACAGTTTCTAAAACATCGTGTTGTACA AGTTGTACCAAGAAAATACCCTCCTCCAAGGATATTGAAAGGATCTTTTGTCCAGCGAGATTTTCCTAGTGCTTTTCAGCAACAGGATTTGCTTTCTGCT TCAAAAGAGGGTTTACAAAAAGTTGTTTCTGCTACCAAGCCTATGGAGAAAGCTGCTGCGGAAATTGCCGGAAGGAAATGCCCTTCTCTAGGGATGAACT CAAGTGATTGTGATGATATTAGTGATCATGGACAGTTTCCACAAAATCCAACGATGTCAAAAGCATCTTCTGTCCAACGAGATTTTTCTAGTGGTTTTGG GCGACAGGATTTTCATTCTGCTTCAAAAGAGGGTTTACTAAATACTGTTTCTGCTAGCAATCCCAAAGAGAAAGCCGCTGCAGAAGCTGCCTCAAGGAAA TGCCATTCTCCAGGTATATTGACAGACTTTTTGGCCAAGCAGATTCGTCCTGCTGCAAAACAGAATATGTCTTCTGTTTCTAATGACATTTCAACCAATG ACCGCCGGAAACAAAACTCTGTTTCCCAAGAAAATATCATAACAAATAGTTGCGGAAATCAGAATACTGGTTCTGTTTCCAATGACATTTTTCTGCGAAA TGGGAAGAATGCTACTAGGGTAGCGGGTTTTAGGCCGAAGAGGAGGTTTAATGTTACTTTGGGCAACAAGGAAACTGGTCAGTGTCATCAAAAATCAAGT GCTCGATGCGATGAAGTGAAGAAGGTCCTGAGATTGTTTCATCAAGTACTTGCCAAGCTCTGGAAAGAAAATGCAAGGAAGCCAAAAATGGAGAAAGACT ATAACATCCCTAGACATGCAGCATTATTTCTTAAAGATCACAAAAAATGGATTAATACAAGCAAACGGGTAGGTCCTGTTCCTGGAGTTAACATCGGTGA CAAATTTCGATTTCAGGCTGAACTGAATGTAATTGGCCTTCATTGTCACTTTTACAACGGTATAGATTATATGAAGAAGAATGGGATCTCATTGGCCACT AGCATTGTCGTGTCTGAGCGGTATGCTAATAACATGGAATCTTCCAATGTCCTCATTTATTCTGGTTCTGGTGGAAATCCAGCAGTTCGAGGTCAGCAAC CACTTAAAGATCAAAAACTAGAACGAGGAAATCTTGCATTGAAGCACAGTATGGATTGTAAAACTCCCGTTCGAGTCATTTGTAAAGTAAAGCTCAAGAG TCCTCAAGCAGCTTCCTTTGAAGGTACATGCAAGCGCAAAAATTTGAACCCAATATATGTCTATGATGGTCTTTTCACAGTTGAAAAATTTTGGGAAGAA AGAGGAGAATTTGGTAAACTTGTCTATAAATTCAAGTTAAAGAGAAATTTGGATCAACCGCAGTTACCTTGA
AA sequence Show only first row Show all	>Potri.012G115500.2 pacid=42783554 polypeptide=Potri.012G115500.2.p locus=Potri.012G115500 ID=Potri.012G115500.2.v4.1 annot-version=v4.1 MSSECRSTWSCNSRTSTQCLLKSKHRRVDATCEFPRGCGRFPVVMDSSDSEDGIGDHSQFLKHRVVQVVPRKYPPPRILKGSFVQRDFPSAFQQQDLLSA SKEGLQKVVSATKPMEKAAAEIAGRKCPSLGMNSSDCDDISDHGQFPQNPTMSKASSVQRDFSSGFGRQDFHSASKEGLLNTVSASNPKEKAAAEAASRK CHSPGILTDFLAKQIRPAAKQNMSSVSNDISTNDRRKQNSVSQENIITNSCGNQNTGSVSNDIFLRNGKNATRVAGFRPKRRFNVTLGNKETGQCHQKSS ARCDEVKKVLRLFHQVLAKLWKENARKPKMEKDYNIPRHAALFLKDHKKWINTSKRVGPVPGVNIGDKFRFQAELNVIGLHCHFYNGIDYMKKNGISLAT SIVVSERYANNMESSNVLIYSGSGGNPAVRGQQPLKDQKLERGNLALKHSMDCKTPVRVICKVKLKSPQAASFEGTCKRKNLNPIYVYDGLFTVEKFWEE RGEFGKLVYKFKLKRNLDQPQLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Potri.012G115500 [exp]	0	1
AT4G32490		AtENODL4	early nodulin-like protein 4 (...		Potri.017G011200 [exp]	9.16	0.8294
AT3G51290			Protein of unknown function (D...		Potri.007G056700 [exp]	21.90	0.8368
AT3G09032			unknown protein		Potri.006G097700 [exp]	35.66	0.7806
AT3G19540			Protein of unknown function (D...		Potri.001G297500 [exp]	39.42	0.7795
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Potri.017G069600 [exp]	39.94	0.7870
AT1G05070			Protein of unknown function (D...		Potri.005G038000 [exp]	40.29	0.7649
AT3G07350			Protein of unknown function (D...		Potri.009G144600 [exp]	44.15	0.8217
AT2G41550			Rho termination factor (.1)		Potri.016G043300 [exp]	71.30	0.8000
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.005G053800 [exp]	73.19	0.7540	Pt-IAA8.1
AT4G16650			O-fucosyltransferase family pr...		Potri.003G077500 [exp]	75.49	0.7526

Compare expression of checked genes

Potri.012G115500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.