Plant FIBer expression Database

Potri.012G115900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37500 615 / 0 arginine biosynthesis protein ArgJ family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G112400
[exp]
228 / 3e-73 AT2G37500 125 / 2e-34 arginine biosynthesis protein ArgJ family (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003981
[exp]
610 / 0 AT2G37500 605 / 0.0 arginine biosynthesis protein ArgJ family (.1.2)
Lus10023757
[exp]
300 / 2e-100 AT2G37500 275 / 2e-91 arginine biosynthesis protein ArgJ family (.1.2)
Lus10023756
[exp]
184 / 7e-56 AT2G37500 253 / 4e-84 arginine biosynthesis protein ArgJ family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0635 DmpA_ArgJ PF01960 ArgJ ArgJ family
Representative CDS sequence
>Potri.012G115900.1 pacid=42784214 polypeptide=Potri.012G115900.1.p locus=Potri.012G115900 ID=Potri.012G115900.1.v4.1 annot-version=v4.1
ATGCATACTTGTGCTCCTCCTCATCACTTTTCCTCTCTAAAGTTCCCTGAACTTCATGGCTCCTCAAAGCTTAATAATTTGCAGGTTTTGAGGTCTTTTG
GTTTGAGTAAGAGAAGCTTTAAGGTATTTGCAGTGGCTGCTTCATCGTCATCAAGCATGAGTGAGGCCTCTAATTATATACCTGCTGCTCCTATTTTTCT
TCCTGAAGGACCATGGCAGCAAATTCCTGGGGGAGTTACTGCTGCAAAGGGGTTCAAAGCGGCAGGAATATATGGTGGATTGCGTGCCAAAGGAGAGAAG
CCTGATCTTGCGCTTGTTACTTGTGATGTTGACGCTACAGCTGCAGGGGCATTCACTACCAACATGGTTGCAGCTGCACCAGTATTATACTGTAAAAATG
CATTAGATATCTCAAAAACAGCACGTGCAGTGTTAATAAATGCTGGTCAAGCAAATGCAGCAACAGGTGATGCAGGCTACCAAGATGTGCTAGAATCTGC
TGGTGCTCTTGCTATGTTACTTAAATTGAAGCCTGAGGAAGTTTTGATTGAATCCACTGGTATCATAGGTCAAAGAATAAAGAAGGGAGCACTTCTAAAT
TCGCTTCCAAAACTGGTTAATTCTTTATCTCCATCCATTGAAGGGGCAGGTTCCGCAGCTGTCGCAATCACAACAACTGACCTTGTAAGCAAGAGTGTGG
CCATTGAGTCTCAGGTTGGAGGGACAAATATAAAAGTTGGGGGAATGGCCAAAGGTTCTGGGATGATCCACCCAAATATGGCCACCATGCTCGGTGTTAT
AACGACTGATGCCCTTGTCAACAGTGATGTTTGGAGAAAAATGGTGCAGATTTCAGTGAATCGGAGTTTTAACCAAATTACTGTAGATGGGGATACAAGT
ACAAATGATACAGTCATTGCTTTGGCTAGCGGATTATCTGGATCAATCTCAATATCTAACATAAACTGCCATGAGGCAATGCAACTTCAAGCATGCCTTG
ATGCTGTAATGCAAGGTCTTGCAAAATCAATAGCTTGGGATGGAGAAGGAGCTACATGTCTAATTGAGGTCACAGTAACTGGGGCAGAAAGTGAGGCGAA
GGCAGCAAAAATTGCACGCGCAGTAGCATCGTCTTCTCTTGTCAAGGCAGCTGTTTATGGCAGAGATCCAAACTGGGGACGCATTGCTGCTGCTGCTGGC
TATGCAGGAATTCCTTTCCACCAAAACAATCTTCGTATTATGCTGGGAGATATTTTGCTGATGGATAATGGGCAACCACTTTCATTTGACAGGTCTGCGG
CCAGTAACTATCTTAGGAAGGCTGGTGAGATCCATGGCACGGTTGGAATCTACATATCCGTGGGTGATGGACCAGGAAGTGGGCAAGCCTGGGGCTGTGA
TTTAAGTTATGATTATGTCAAAATAAATGCTGAATACACAACATAG
AA sequence
>Potri.012G115900.1 pacid=42784214 polypeptide=Potri.012G115900.1.p locus=Potri.012G115900 ID=Potri.012G115900.1.v4.1 annot-version=v4.1
MHTCAPPHHFSSLKFPELHGSSKLNNLQVLRSFGLSKRSFKVFAVAASSSSSMSEASNYIPAAPIFLPEGPWQQIPGGVTAAKGFKAAGIYGGLRAKGEK
PDLALVTCDVDATAAGAFTTNMVAAAPVLYCKNALDISKTARAVLINAGQANAATGDAGYQDVLESAGALAMLLKLKPEEVLIESTGIIGQRIKKGALLN
SLPKLVNSLSPSIEGAGSAAVAITTTDLVSKSVAIESQVGGTNIKVGGMAKGSGMIHPNMATMLGVITTDALVNSDVWRKMVQISVNRSFNQITVDGDTS
TNDTVIALASGLSGSISISNINCHEAMQLQACLDAVMQGLAKSIAWDGEGATCLIEVTVTGAESEAKAAKIARAVASSSLVKAAVYGRDPNWGRIAAAAG
YAGIPFHQNNLRIMLGDILLMDNGQPLSFDRSAASNYLRKAGEIHGTVGIYISVGDGPGSGQAWGCDLSYDYVKINAEYTT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37500 arginine biosynthesis protein ... Potri.012G115900
[exp]
0 1
AT2G26200 S-adenosyl-L-methionine-depend... Potri.006G225600
[exp]
2.23 0.7443
AT1G76010 Alba DNA/RNA-binding protein (... Potri.002G017600
[exp]
5.74 0.7339
AT5G63460 SAP domain-containing protein ... Potri.012G096900
[exp]
6.00 0.6990
AT4G01100 ADNT1 adenine nucleotide transporter... Potri.014G095400
[exp]
7.34 0.7132
AT1G07830 ribosomal protein L29 family p... Potri.014G111100
[exp]
8.36 0.7226
AT5G64200 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG ... Potri.002G095800
[exp]
9.89 0.6863
AT4G33100 unknown protein Potri.006G224400
[exp]
12.00 0.7023
AT2G32060 Ribosomal protein L7Ae/L30e/S1... Potri.003G181200
[exp]
12.48 0.7239
AT2G45240 MAP1A methionine aminopeptidase 1A (... Potri.014G067300
[exp]
14.07 0.6659 MAP1.3
AT3G44750 HDT1, HDA3, ATH... HISTONE DEACETYLASE 2A, histon... Potri.009G149400
[exp]
15.29 0.7381 HD2.2,HDT901

Potri.012G115900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.