Plant FIBer expression Database

Potri.012G116250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G116900
[exp]
46 / 9e-07 AT5G45160 124 / 3e-31 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Potri.012G116170
[exp]
46 / 1e-06 AT5G45160 213 / 5e-62 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G116250.1 pacid=42783780 polypeptide=Potri.012G116250.1.p locus=Potri.012G116250 ID=Potri.012G116250.1.v4.1 annot-version=v4.1
ATGTTGACATGCTGCGACACCTACATTATAGCGCACTTGAAAGTTTTAGGAACAAGTTACACCTACATTGTCGATGACCTTGAGGGTGAAACTGTCGATA
AGAGTTCCGATTTCCAGAATGCTAGTGACACCGCTAATGACAGTGCCGGTGAGCTTGAAGGTGACACTTTTGATGACCTTGACGATGACCTTGAAGGTGA
CACTTCTGATGACCATGCCGATGATAATGACCTAGTTGATAACAATATCGAGAATGCCAATGATAGTGCCGATAACCTTGTAGATGATTGTGCCGATGAC
ACCGTTGACGACTGTGACAATGAATAA
AA sequence
>Potri.012G116250.1 pacid=42783780 polypeptide=Potri.012G116250.1.p locus=Potri.012G116250 ID=Potri.012G116250.1.v4.1 annot-version=v4.1
MLTCCDTYIIAHLKVLGTSYTYIVDDLEGETVDKSSDFQNASDTANDSAGELEGDTFDDLDDDLEGDTSDDHADDNDLVDNNIENANDSADNLVDDCADD
TVDDCDNE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G116250
[exp]
0 1
AT4G13440 Calcium-binding EF-hand family... Potri.019G027200
[exp]
9.27 0.7638
Potri.014G065500
[exp]
24.85 0.7024
AT1G15170 MATE efflux family protein (.1... Potri.008G126500
[exp]
28.46 0.6915
AT3G25930 Adenine nucleotide alpha hydro... Potri.010G123300
[exp]
46.50 0.6663
AT5G62170 unknown protein Potri.015G135200
[exp]
56.65 0.6769
AT4G33880 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (... Potri.001G294300
[exp]
91.20 0.6314
AT4G35160 O-methyltransferase family pro... Potri.013G121400
[exp]
96.74 0.6219 Pt-OOMT2.15
AT5G57880 MPS1, ATPRD2 ARABIDOPSIS THALIANA PUTATIVE ... Potri.006G182201
[exp]
98.12 0.6259
Potri.004G021901
[exp]
106.56 0.6363
AT1G72570 AP2_ERF Integrase-type DNA-binding sup... Potri.001G169500
[exp]
136.23 0.6232 RAP15

Potri.012G116250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.