Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45160 506 / 4e-172 Root hair defective 3 GTP-binding protein (RHD3) (.1) AT1G72960 461 / 9e-155 Root hair defective 3 GTP-binding protein (RHD3) (.1) AT3G13870 457 / 3e-153 GOM8, RHD3 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) AT2G38840 51 / 2e-06 Guanylate-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G112700 [exp] 540 / 0 AT5G45160 1161 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116130 [exp] 490 / 8e-167 AT5G45160 707 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116700 [exp] 487 / 6e-166 AT5G45160 727 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116210 [exp] 486 / 8e-166 AT5G45160 719 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G117300 [exp] 480 / 5e-164 AT5G45160 620 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.003G038900 [exp] 471 / 2e-158 AT3G13870 1220 / 0.0 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) Potri.001G201000 [exp] 470 / 3e-158 AT1G72960 1204 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.015G112600 [exp] 466 / 2e-157 AT5G45160 717 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116000 [exp] 456 / 5e-153 AT5G45160 671 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036195 [exp] 529 / 1e-180 AT5G45160 1216 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10018282 [exp] 520 / 5e-179 AT5G45160 1055 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10040630 [exp] 517 / 4e-176 AT5G45160 1221 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10038333 [exp] 514 / 1e-174 AT5G45160 1217 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10037641 [exp] 432 / 3e-143 AT1G72960 1108 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10015623 [exp] 316 / 1e-96 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10036197 [exp] 183 / 8e-56 AT5G45160 239 / 2e-75 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10024841 [exp] 46 / 6e-05 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10018755 [exp] 46 / 6e-05 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10003085 [exp] 44 / 8e-05 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05879 [poplar] [flax] RHD3 Root hair defective 3 GTP-binding protein (RHD3)
Representative CDS sequence Show only first row Show all	>Potri.012G117100.1 pacid=42782657 polypeptide=Potri.012G117100.1.p locus=Potri.012G117100 ID=Potri.012G117100.1.v4.1 annot-version=v4.1 ATGGCGGAAGATTGTTGCAGCTTCCAACTCATTAGCGGTGCCGGTGTCTTAAACGTGGAAGGACTCGAAAACTTCACGAGGACCACCAACCTCGCACAGC GTCGTCTCTCCTATGCTGCTGTTGCAGTTATTGGCCCCCAAAGTAGCGGGAAGAGCACCCTCTTGAATAAGCTCTTTCGGACAGATTTCACGATGATGGA TGCATATGAAGGAAGGGGTCAAACAACCCAAGGGATTTGGATTGGGAAGGGTATTGGTATTGAGCCTTTCACAATTGCCATCGATGTGGAGGGATCGGAC AGCAGCGAAAGAGGCCAAGACGGCACAACAACATTTGAAAAGCGAAGTGCTCTCTTTGCTTTGGCAATTGCTGACATTGTAATAATAAACATGTGGTGCC ATGACATTGGTCGAGATAATGCTGCCAGCAGACCCCTTTTGAAAACAGTTTTTGAGGCCATGACGCGTTTATTTGGCGCCCGCAAAACAACCCTGTTGTT TGTTCTACGCGACCAAACACCGACTCCACTTGAACGTCTAAAACATATTCTGAGGCGAGATATTGATCAGATATGGGCTGCAGCTGCTAAATCCAAGGCT CAGACTCTGGGTGATTTTTTTAATGTGGAGATCATTGCTTTGCCTAACTTTCTATACGAGAAGGAGAGGTTTAATGAGCAGGTTGCTCTGCTGAGGCAGC GGTTCATCCATTCCATCTCTCCAGGAGGTCTTGTTGGTGATAGGAAGGATGTTCAACCTGCTTCAGGGTTTCCCCTTCGTGTAGAACAGATATGGAAAAC CATAAAGGAAAACAAGGATCTGGATCTTCCTGCTTTGGAGGTGATGGTTGCCACATTTCGATGTGAACAGATTGCCAAGGAGAAGCTCAGTAGCTTGAAA TTGGATGGGACTTGGTTGGCAATGAGTAAAGCTCTTAAATCCGGCCCCGTATCAGAGTTCGGGAAAAAGCTCAGCTCTATTTTGGAAAGCTATCTTTCTC AATATGACAAGGAGGCGATGGATTATGAAGAAAGCATTAGAAAAGACAAACAGCAACGGTTAGAAACAGAAGCACTACAATTTGTATACCCAGCTTATGC TGCCATGCTGCAACATCTACGTTCTACTGCACTGAAAAGCTTTAAGACTAGGCTGGAAAAGACGGTGAAGGAGAAACGAGGAGATGGATTTGAAGAGTCT GTTGATAATTGTGGTTGGTTCGGCATGCTCGAATTTGAGAGAGGATGTGAAGATGCAACTATAAAAAAAAGGGTTAGTGGCTGGCTTGCTGAAAAAGTCA ATGTCAAGGATAGACTTCGCGGGGACATAGAGACACTTAAATCCAATAAGAAAGCCGAATATAAGTCTGAAAGGAAGAAAATCAAGGAAGAAAAAATTAA GAAAGGAGTAACTACGACTGCGGGGGTCGTGGCGGGGGTGACGGTGGGGGCGGCAATGACGCTGGTTAGTGATCCAGTCACGGCAAGTGCAACAGGGATA GGGGTGTCGACTGCAACAATACAGCTAATTGATATTGCGCGTGATATTTTTCGTAGAAGTTAG
AA sequence Show only first row Show all	>Potri.012G117100.1 pacid=42782657 polypeptide=Potri.012G117100.1.p locus=Potri.012G117100 ID=Potri.012G117100.1.v4.1 annot-version=v4.1 MAEDCCSFQLISGAGVLNVEGLENFTRTTNLAQRRLSYAAVAVIGPQSSGKSTLLNKLFRTDFTMMDAYEGRGQTTQGIWIGKGIGIEPFTIAIDVEGSD SSERGQDGTTTFEKRSALFALAIADIVIINMWCHDIGRDNAASRPLLKTVFEAMTRLFGARKTTLLFVLRDQTPTPLERLKHILRRDIDQIWAAAAKSKA QTLGDFFNVEIIALPNFLYEKERFNEQVALLRQRFIHSISPGGLVGDRKDVQPASGFPLRVEQIWKTIKENKDLDLPALEVMVATFRCEQIAKEKLSSLK LDGTWLAMSKALKSGPVSEFGKKLSSILESYLSQYDKEAMDYEESIRKDKQQRLETEALQFVYPAYAAMLQHLRSTALKSFKTRLEKTVKEKRGDGFEES VDNCGWFGMLEFERGCEDATIKKRVSGWLAEKVNVKDRLRGDIETLKSNKKAEYKSERKKIKEEKIKKGVTTTAGVVAGVTVGAAMTLVSDPVTASATGI GVSTATIQLIDIARDIFRRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117100 [exp]	0	1
AT1G12100			Bifunctional inhibitor/lipid-t...		Potri.001G121800 [exp]	13.03	0.8701
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Potri.004G156300 [exp]	18.16	0.8676
AT1G02800		ATCEL2	cellulase 2 (.1)		Potri.001G083200 [exp]	22.09	0.7850
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.013G049925 [exp]	24.57	0.8671
AT5G14650			Pectin lyase-like superfamily ...		Potri.001G346800 [exp]	24.79	0.8675
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.004G042600 [exp]	25.88	0.7778
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Potri.013G019500 [exp]	31.19	0.8604
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Potri.019G023600 [exp]	33.98	0.8619
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.002G080400 [exp]	34.75	0.8594
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	36.00	0.8562	Pt-NRAMP1.4

Compare expression of checked genes

Potri.012G117100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.