Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35640 185 / 6e-56 Trihelix Homeodomain-like superfamily protein (.1) AT1G31310 167 / 2e-48 Trihelix hydroxyproline-rich glycoprotein family protein (.1) AT2G33550 71 / 1e-13 Trihelix Homeodomain-like superfamily protein (.1) AT4G31270 54 / 6e-08 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G51800 45 / 4e-05 Trihelix Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G066900 [exp] 67 / 2e-12 AT2G33550 328 / 4e-112 Homeodomain-like superfamily protein (.1) Potri.003G163000 [exp] 66 / 6e-12 AT2G33550 340 / 9e-117 Homeodomain-like superfamily protein (.1) Potri.015G105800 [exp] 64 / 4e-11 AT2G33550 187 / 9e-57 Homeodomain-like superfamily protein (.1) Potri.006G279100 [exp] 50 / 2e-06 AT4G31270 145 / 5e-40 sequence-specific DNA binding transcription factors (.1) Potri.012G132300 [exp] 45 / 5e-05 AT5G51800 866 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018283 [exp] 78 / 8e-18 AT2G35640 93 / 6e-24 Homeodomain-like superfamily protein (.1) Lus10026986 [exp] 46 / 3e-05 AT4G31270 149 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10027398 [exp] 46 / 3e-05 AT5G51800 842 / 0.0 Protein kinase superfamily protein (.1) Lus10020182 [exp] 45 / 4e-05 AT4G31270 144 / 1e-39 sequence-specific DNA binding transcription factors (.1) Lus10040629 [exp] 43 / 0.0002 AT1G31310 104 / 3e-26 hydroxyproline-rich glycoprotein family protein (.1) Lus10031672 [exp] 43 / 0.0003 AT5G51800 885 / 0.0 Protein kinase superfamily protein (.1) Lus10040628 [exp] 0 / 1 AT2G35640 69 / 5e-24 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G117500.1 pacid=42783109 polypeptide=Potri.012G117500.1.p locus=Potri.012G117500 ID=Potri.012G117500.1.v4.1 annot-version=v4.1 ATGATGGCTGATCAAGGTGGTAAGAGTTTGATAAGGGAATATAAGAAAGGTAACTGGACAGTTAGTGAGACTATGGTGTTGATTGAAGCAAAAAGAATGG ATGATGAGAGGAGAATGAAAAGAAGTGATAGTGCAGAAGGGAGAAGCAAGCCAACGGAGCTTAGATGGAAATGGGTTGAAGATTATTGTTGGAAACAAGA GTGTTTGAGGAGCCAAAACCAGTGCAATGACAAATGGGATAATTTAATGAGAGATTACAAGAAAGTTAGAGATTATGAGAGGAAAATTGCTGAGACAGGA GAAAGAAATGGAGGGTCTTATTGGAAGCTTGAAAAGAATGAACGAAAAGAGAGAAACTTGCCTAGTAACATGTTGCCTCAGATATATGAGGAATTAGTGG AGGTTGTGGAGAGGAGAGGTGGTCAACAGAGGATGCTTACAGCTGCTGGTGGGTCAGGTTCTAATCCTAACACAACCTATGTGGTAGAGAGACCAATAAC TGATGTTCAGCCTTCAGTACTGCCTCCTCTTTTGCAGCATCAAGTCTCAGCTGCTCCAACTCCAGCATTACCTCTACCTCCTCCCTGCCCACCACCATCA CAACAACCACAAGCTCAACCACCTCCTCCAATCCAATTTCCTGAGCCATTTCCCACAATGTGTGATAGCTCAGATTCTGATACAAGTGAGTATTCAAACT CCCCAGCAAAGAGAAGGAGAAGAGGCGGTGGAGGTGGGGAAGGAACCAGTGGTGGCACTGCCAGTGCAAGCACCTCACATGAAGTGGGCACTGCCATTTC CAAAAGTGCTTCTATCATTGCAGAAGCAATTCAGGCCTGTGATGAGAGAGAAGAAAGAAGACACAGAGATCTCTTGGGTTTGCATGAGAGAAGACTCAAG ATCGAGGAATCCAAGACAGAAATCAACAGGCAAGGCATTAGTGGTTTAGTTGATGCCATTAACAAGCTTGCTAATTCAATCCTTGCTCTGGCTTCTCATA AGAACCAGTCATCAGGTCCAAAATAA
AA sequence Show only first row Show all	>Potri.012G117500.1 pacid=42783109 polypeptide=Potri.012G117500.1.p locus=Potri.012G117500 ID=Potri.012G117500.1.v4.1 annot-version=v4.1 MMADQGGKSLIREYKKGNWTVSETMVLIEAKRMDDERRMKRSDSAEGRSKPTELRWKWVEDYCWKQECLRSQNQCNDKWDNLMRDYKKVRDYERKIAETG ERNGGSYWKLEKNERKERNLPSNMLPQIYEELVEVVERRGGQQRMLTAAGGSGSNPNTTYVVERPITDVQPSVLPPLLQHQVSAAPTPALPLPPPCPPPS QQPQAQPPPPIQFPEPFPTMCDSSDSDTSEYSNSPAKRRRRGGGGGEGTSGGTASASTSHEVGTAISKSASIIAEAIQACDEREERRHRDLLGLHERRLK IEESKTEINRQGISGLVDAINKLANSILALASHKNQSSGPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Potri.012G117500 [exp]	0	1
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.007G081200 [exp]	2.44	0.9582	CYP78A21v1
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.002G115100 [exp]	4.12	0.9399
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.002G019900 [exp]	4.24	0.9590	Pt-CLV1.1
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.002G035200 [exp]	4.47	0.9586
AT3G44460	bZIP	DPBF2, ATBZIP67	basic leucine zipper transcrip...		Potri.009G164500 [exp]	5.38	0.9219	Pt-DPBF2.1
AT5G49100			unknown protein		Potri.010G012000 [exp]	6.32	0.9586
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Potri.008G148200 [exp]	6.63	0.9465	ATHB13.2
AT2G22590			UDP-Glycosyltransferase superf...		Potri.018G140401 [exp]	7.07	0.9520
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.015G005900 [exp]	7.74	0.9446
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	8.36	0.9550	Pt-ATML1.1

Compare expression of checked genes

Potri.012G117500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.