Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04770 392 / 2e-138 RPSAB 40s ribosomal protein SA B (.1.2) AT1G72370 390 / 2e-137 AP40, RPSAA, RP40, P40 40s ribosomal protein SA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G112900 [exp] 484 / 5e-174 AT3G04770 399 / 6e-141 40s ribosomal protein SA B (.1.2) Potri.001G164000 [exp] 409 / 1e-144 AT1G72370 386 / 9e-136 40s ribosomal protein SA (.1.2) Potri.003G071200 [exp] 409 / 3e-144 AT1G72370 384 / 1e-134 40s ribosomal protein SA (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018284 [exp] 409 / 1e-144 AT3G04770 424 / 3e-151 40s ribosomal protein SA B (.1.2) Lus10040626 [exp] 404 / 7e-143 AT3G04770 421 / 5e-150 40s ribosomal protein SA B (.1.2) Lus10013183 [exp] 402 / 1e-141 AT3G04770 424 / 7e-151 40s ribosomal protein SA B (.1.2) Lus10037445 [exp] 401 / 2e-141 AT3G04770 413 / 9e-147 40s ribosomal protein SA B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0067 [poplar] [flax] SIS PF00318 [poplar] [flax] Ribosomal_S2 Ribosomal protein S2
Representative CDS sequence Show only first row Show all	>Potri.012G117600.1 pacid=42783250 polypeptide=Potri.012G117600.1.p locus=Potri.012G117600 ID=Potri.012G117600.1.v4.1 annot-version=v4.1 ATGGCGACGAACACAGCATCGCCAGCTCCACCACGGGAGCTGTCGCAGAAAGAAGCCGACATTCAAATGATGTTGGCTGCTGAAGTCCACCTCGGCACCA AGAACTGTAATTTCCAAATGGAACGTTACGTTTTCAAGCGCCGCAACGACGGAATTTACATCATCAATCTTGGGAAGACATGGGATAAACTTCTATTGGC TGCCAGGGTTATTGTTGCCATTGAAAACCCACAAGACATTATTGTTCAGTCAGCTAGGCCCTATGGTCAGAGAGCTGTTTTGAAGTTTGCTCAATGCACA GGTGCTAATGCTATTGCTGGAAGGCATACTCCTGGTACATTTACAAATCAGCTCCAAACTACCTTCTGTGAGCCTCGTCTTCTCGTCCTTACCGACCCAA GGACTGACCACCAGCCAATCAAAGAAGCAGCCTTGGGAAATATCCCAACTATTGCTTTCTGCGACACTGACTCACCAATGCGGTTTGTGGATATTGGTAT TCCAGCCAATAACAAGGGGAAGCACAGCATTGGGTGTCTATTTTGGCTTTTGGCAAGGATGGTTCTCCAAATGCGTGGCACCATTCGTCCAGGGCACAAG TGGGACATGATGGTTGATTTATTTTTCTACAGGGAGCCTGAGGAAACAAAACCACAGGAGGAGGAAGATGTGGTTGCTCCAGTTGACTATGCACTTACTG GAGCTGACTATATGGGTGGTGCCACTGATGGCTGGTCTAATCCTGTTGCTGATGGTGGATGGACCAATGAAGCGATACCGATTCCTGCTGCACCTGCTAC AACAAGCTTGACACCAGACCAAGCAGGTGGATTGGATGATTGGGGTGCTGCTGCTGCTCCTGCTCCTGTTCCTGCTCCCCCACCTCAACCTGTAGTCGAT GATGGTGGTAGTTGGTCGTGA
AA sequence Show only first row Show all	>Potri.012G117600.1 pacid=42783250 polypeptide=Potri.012G117600.1.p locus=Potri.012G117600 ID=Potri.012G117600.1.v4.1 annot-version=v4.1 MATNTASPAPPRELSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWDKLLLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQCT GANAIAGRHTPGTFTNQLQTTFCEPRLLVLTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHK WDMMVDLFFYREPEETKPQEEEDVVAPVDYALTGADYMGGATDGWSNPVADGGWTNEAIPIPAAPATTSLTPDQAGGLDDWGAAAAPAPVPAPPPQPVVD DGGSWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Potri.012G117600 [exp]	0	1
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Potri.015G112900 [exp]	1.73	0.9384	P40.4
AT2G40010			Ribosomal protein L10 family p...		Potri.008G066300 [exp]	5.74	0.9176
AT4G20980			Eukaryotic translation initiat...		Potri.004G044500 [exp]	6.32	0.8353
AT5G39850			Ribosomal protein S4 (.1)		Potri.018G062300 [exp]	7.74	0.8586
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.003G081600 [exp]	8.30	0.8539
AT5G20890			TCP-1/cpn60 chaperonin family ...		Potri.001G341100 [exp]	9.38	0.8739
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.017G100800 [exp]	11.74	0.8977
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.012G139400 [exp]	14.42	0.9069
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Potri.007G035600 [exp]	15.49	0.8854
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.001G153000 [exp]	17.88	0.8652

Compare expression of checked genes

Potri.012G117600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.