Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45120 575 / 0 Eukaryotic aspartyl protease family protein (.1) AT4G16563 157 / 3e-42 Eukaryotic aspartyl protease family protein (.1) AT3G52500 155 / 6e-42 Eukaryotic aspartyl protease family protein (.1) AT3G25700 125 / 2e-31 Eukaryotic aspartyl protease family protein (.1.2) AT2G03200 118 / 1e-28 Eukaryotic aspartyl protease family protein (.1) AT1G09750 114 / 2e-27 Eukaryotic aspartyl protease family protein (.1) AT1G01300 108 / 3e-25 Eukaryotic aspartyl protease family protein (.1) AT3G54400 107 / 4e-25 Eukaryotic aspartyl protease family protein (.1) AT2G28010 101 / 4e-23 Eukaryotic aspartyl protease family protein (.1) AT2G28040 90 / 2e-19 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G113100 [exp] 739 / 0 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 184 / 2e-52 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 176 / 2e-49 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 166 / 8e-46 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 159 / 3e-43 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 153 / 3e-41 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 135 / 6e-35 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G306200 [exp] 120 / 2e-29 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 115 / 1e-27 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018286 [exp] 482 / 3e-167 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10040624 [exp] 221 / 1e-69 AT5G45120 222 / 3e-70 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 195 / 2e-56 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 191 / 3e-54 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10000725 [exp] 189 / 3e-54 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Lus10008513 [exp] 188 / 7e-54 AT4G16563 493 / 7e-172 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 154 / 2e-41 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 142 / 4e-37 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10041494 [exp] 128 / 5e-32 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10040623 [exp] 113 / 3e-29 AT5G45120 146 / 6e-42 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.012G118000.1 pacid=42783032 polypeptide=Potri.012G118000.1.p locus=Potri.012G118000 ID=Potri.012G118000.1.v4.1 annot-version=v4.1 ATGGCCATAATGCTCAACAACATCACCACCTTTCTTTTCTTTCTTCTGGTCAATAGTCTGCTCTTCTATTCAATTCAGTCCCTAGCAAGACCAAGAAACC CTAATTCACTCATTCTTGGTCTTACCCCAGCTTCTAGGGCTTCCCTTCCAACTCATCCAAAAGCTTCCACTTCTTCAAGAAAGAAACTAACTGATGTTTT GGACATGATGGAGCCATTGAGGGAGGTTAGAGATGGGTATTTGATATCTCTAAGTATAGGCACACCCCCACAAGTCATTCAAGTGTATATGGACACTGGG AGTGACCTTACTTGGGCTCCTTGTGGAAACATTTCTTTTGATTGCATAGAATGTGATGATTATAGAAACAACAGGATGATGGCAAGTTTTTCTCCTTCTC ATTCTTCTTCATCACATAGGGACTCCTGTACTAGTCCCTTCTGCATTGATGTTCATAGTTCTGACAACCCCTTGGATCCATGCACTATGGCTGGATGCTC ATTGAGTACCCTTGTTAAAGCCACATGTTCTTGGCCATGCCCTCCATTTGCTTACACTTACGGTGCAGGAGGGGTTGTCGCTGGGACACTAACTAGGGAT ACGCTTAGGGTTCATGGAAGAAACCTTGGTGTCACTCAAGAAATCCCAAGATTCTGTTTTGGTTGCGTTGCGTCTTCGTATAGGGAACCTATTGGGATTG CAGGGTTTGGTAGAGGTGCACTTTCTTTGCCTTCACAACTAGGTTTTCTTCGAAAGGGCTTCTCACATTGCTTCTTGGCCTTCAAATATGCAAACAACCC TAATATTTCAAGCCCATTAATTATAGGAGATATTGCCCTTACTTCTAAAGATGATATGCAATTCACTCCAATGTTGAAGAGTCCCATGTACCCTAATTAC TACTACGTTGGTCTAGAGGCCATAACTGTAGGTAATGTTAGTGCAACTGAAGTGCCATCAAGCTTGAGGGAGTTTGATTCACTTGGTAATGGGGGCATGT TGGTTGACTCAGGAACCACTTACACTCACCTACCTGAGCCATTCTATTCTCAGGTTCTCTCTGTTCTTCAATCAATAATAAATTACCCTAGAGCCACTGA TATGGAGATGAGAACCGGGTTCGATCTTTGTTACAAGGTACCATGTCAAAACAACAGCATTCTCACGGGTGATCTCCTCCCTTCAATAACTTTCCATTTT TTGAACAATGCGAGTCTAGTTTTGTCCCGGGGAAGTCACTTCTATGCTATGAGTGCCCCAAGTAACTCTACTGTGGTCAAATGCCTACTGTTCCAATCCA TGGATGATGGTGATTATGGACCAGCTGGGGTTTTGGGGAGCTTCCAGCAACAAGACGTGGAGGTTGTCTATGACATGGAGAAAGAGAGAATTGGTTTTCG ACCAATGGACTGTGCTTCAGCTGCATCTTTTCAAGGATTTAACAAGACCTAA
AA sequence Show only first row Show all	>Potri.012G118000.1 pacid=42783032 polypeptide=Potri.012G118000.1.p locus=Potri.012G118000 ID=Potri.012G118000.1.v4.1 annot-version=v4.1 MAIMLNNITTFLFFLLVNSLLFYSIQSLARPRNPNSLILGLTPASRASLPTHPKASTSSRKKLTDVLDMMEPLREVRDGYLISLSIGTPPQVIQVYMDTG SDLTWAPCGNISFDCIECDDYRNNRMMASFSPSHSSSSHRDSCTSPFCIDVHSSDNPLDPCTMAGCSLSTLVKATCSWPCPPFAYTYGAGGVVAGTLTRD TLRVHGRNLGVTQEIPRFCFGCVASSYREPIGIAGFGRGALSLPSQLGFLRKGFSHCFLAFKYANNPNISSPLIIGDIALTSKDDMQFTPMLKSPMYPNY YYVGLEAITVGNVSATEVPSSLREFDSLGNGGMLVDSGTTYTHLPEPFYSQVLSVLQSIINYPRATDMEMRTGFDLCYKVPCQNNSILTGDLLPSITFHF LNNASLVLSRGSHFYAMSAPSNSTVVKCLLFQSMDDGDYGPAGVLGSFQQQDVEVVYDMEKERIGFRPMDCASAASFQGFNKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45120			Eukaryotic aspartyl protease f...		Potri.012G118000 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.006G247800 [exp]	87.08	0.7323
AT3G53830			Regulator of chromosome conden...		Potri.006G089901 [exp]	118.89	0.7159
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.005G185000 [exp]	131.90	0.7131
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196900 [exp]	171.46	0.6948
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.007G086200 [exp]	174.27	0.6885
					Potri.016G103700 [exp]	177.23	0.6923
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027800 [exp]	203.28	0.6803
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Potri.010G143133 [exp]	204.61	0.6789
					Potri.001G259204 [exp]	217.99	0.6695
AT5G56790			Protein kinase superfamily pro...		Potri.001G224800 [exp]	232.80	0.6423

Compare expression of checked genes

Potri.012G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.